C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TATA box binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000616883 TBP-203 ENSG00000112592 9606 + 6:170554333-170572869 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000616883
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000616883 1.805±0.00 1.193±0.30 1.204±0.51 1.188±0.45 2.255±0.00 3.974±0.00 1.716±0.00 1.086±0.00 6.552±4.41 2.312±0.99 20.601±8.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DG CIL_0008DG_0001 VISTA 6:170138007-170739776
CIL_00018G CIL_00018G_0001 CGP 6:170535117-170572870
CIL_00018F CIL_00018F_0001 CGP 6:170554302-170584692

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0006352 IEA DNA-templated transcription, initiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117593 Tbp-004 protein_coding Mus_musculus 0 898
ENSMUST00000014911 Tbp-003 protein_coding Mus_musculus 0 898
ENSMUST00000162505 Tbp-001 protein_coding Mus_musculus 0 898
ENSMUST00000153480 Tbp-008 protein_coding Mus_musculus 0 736
ENSMUST00000119879 Tbp-011 protein_coding Mus_musculus 0 606
ENSDART00000016211 tbp-001 protein_coding Danio_rerio 0 523
ENSMUST00000118001 Tbp-002 protein_coding Mus_musculus 0 403
ENSMUST00000147081 Tbp-006 protein_coding Mus_musculus 0 289
ENSMUST00000149518 Tbp-009 retained_intron Mus_musculus 0 274

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