C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hepatocyte nuclear factor 4, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000619550 HNF4A-201 ENSG00000101076 9606 + 20:44355801-44432843 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLungTestisENST00000619550
Transcript ID Brain Lung Testis
ENST00000619550 0.052±0.00 0.016±0.00 0.213±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007R9 CIL_0007R9_0001 VISTA 20:44272530-44874028
CIL_0006S2 CIL_0006S2_0002 CGP 20:44336986-44432845

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018094 Hnf4a-201 protein_coding Mus_musculus 0 1705
ENSMUST00000109411 Hnf4a-001 protein_coding Mus_musculus 0 1705
ENSMUST00000137449 Hnf4a-004 protein_coding Mus_musculus 0 684
ENSMUST00000131658 Hnf4a-003 processed_transcript Mus_musculus 0 682
ENSMUST00000143911 Hnf4a-002 protein_coding Mus_musculus 0.0000000002 73

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