C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: LIM homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000619939 LHX1-002 ENSG00000273706 9606 + 17:36937635-36941531 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonENST00000619939
Transcript ID Colon
ENST00000619939 0.271±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00085R CIL_00085R_0001 VISTA 17:36355391-36956100
CIL_0007YB CIL_0007YB_0001 VISTA 17:36401446-37002205
CIL_0007YB CIL_0007YB_0003 VISTA 17:36402232-37002285
CIL_0005HV CIL_0005HV_0002 CGP 17:36601572-36944612
CIL_00085Q CIL_00085Q_0001 VISTA 17:36672050-37272645
CIL_00085M CIL_00085M_0001 VISTA 17:36678794-37279927
CIL_0008DP CIL_0008DP_0001 VISTA 17:36790335-37391543
CIL_0008GS CIL_0008GS_0001 VISTA 17:36817120-37418221
CIL_0007ND CIL_0007ND_005J UCNEbase 17:36935930-36936894
CIL_0005HW CIL_0005HW_0002 CGP 17:36936785-37056871

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018842 Lhx1-001 protein_coding Mus_musculus 0 640
ENSMUST00000092827 Lhx1-002 protein_coding Mus_musculus 0 307
ENSMUST00000184646 Lhx1-004 protein_coding Mus_musculus 0 307
ENSDART00000021159 lhx1b-001 protein_coding Danio_rerio 1e-39 169

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