C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 1, type 1, E-cadherin (epithelial)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000621016 CDH1-203 ENSG00000039068 9606 + 16:68737309-68835534 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000621016
Transcript ID Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000621016 0.118±0.00 5.934±0.00 4.935±0.00 11.905±0.00 5.826±0.00 2.642±0.42 7.235±6.84 22.321±13.32 1.144±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004Y9 CIL_0004Y9_0003 CGP 16:68636189-68835548
CIL_0004RG CIL_0004RG_0001 CGP 16:68737225-69085180

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000167688 Cdh1-201 protein_coding Mus_musculus 0 1301
ENSMUST00000000312 Cdh1-001 protein_coding Mus_musculus 0 1301

Loading