C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAR DNA binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000621573 TARDBP-025 ENSG00000120948 9606 + 1:11022548-11024273 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLungMusclePlacentaTestisENST00000621573
Transcript ID Adipose Breast Colon Heart Kidney Lung Muscle Placenta Testis
ENST00000621573 16.184±0.00 12.400±0.00 15.296±0.00 10.874±0.00 21.409±0.00 12.624±0.00 9.528±0.00 17.866±0.31 21.012±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00082Y CIL_00082Y_0001 VISTA 1:10421182-11021687
CIL_0008S2 CIL_0008S2_0001 VISTA 1:10435049-11039184
CIL_0008RU CIL_0008RU_0001 VISTA 1:10491513-11092116
CIL_0008JG CIL_0008JG_0001 VISTA 1:10565145-11165671
CIL_0008JY CIL_0008JY_0001 VISTA 1:10605072-11206087
CIL_00019T CIL_00019T_0002 CGP 1:10946471-11026420

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000147391 Tardbp-005 nonsense_mediated_decay Mus_musculus 0 1312
ENSMUST00000084125 Tardbp-001 protein_coding Mus_musculus 0 942
ENSMUST00000189041 Tardbp-026 processed_transcript Mus_musculus 0 649
ENSMUST00000140897 Tardbp-004 nonsense_mediated_decay Mus_musculus 0 597
ENSMUST00000045180 Tardbp-002 nonsense_mediated_decay Mus_musculus 0 593
ENSMUST00000188134 Tardbp-024 nonsense_mediated_decay Mus_musculus 0 593
ENSMUST00000191450 Tardbp-009 nonsense_mediated_decay Mus_musculus 0 590
ENSMUST00000190287 Tardbp-020 nonsense_mediated_decay Mus_musculus 0 499
ENSMUST00000191378 Tardbp-018 nonsense_mediated_decay Mus_musculus 0 497
ENSMUST00000190552 Tardbp-017 nonsense_mediated_decay Mus_musculus 0 453
ENSMUST00000186317 Tardbp-027 processed_transcript Mus_musculus 0 401
ENSMUST00000105702 Tardbp-201 protein_coding Mus_musculus 0 372
ENSMUST00000172073 Tardbp-203 protein_coding Mus_musculus 0 372
ENSMUST00000165113 Tardbp-202 protein_coding Mus_musculus 0 372
ENSMUST00000190630 Tardbp-021 protein_coding Mus_musculus 0 372
ENSMUST00000186711 Tardbp-025 protein_coding Mus_musculus 0 372
ENSMUST00000187937 Tardbp-028 processed_transcript Mus_musculus 0 372
ENSMUST00000190696 Tardbp-011 nonsense_mediated_decay Mus_musculus 0 346
ENSMUST00000185824 Tardbp-016 protein_coding Mus_musculus 0 222
ENSMUST00000189048 Tardbp-012 protein_coding Mus_musculus 0 222
ENSMUST00000186729 Tardbp-023 nonsense_mediated_decay Mus_musculus 0 222
ENSMUST00000095719 Tardbp-007 protein_coding Mus_musculus 0 219
ENSMUST00000105699 Tardbp-006 protein_coding Mus_musculus 0 219
ENSMUST00000117876 Gm13886-001 processed_pseudogene Mus_musculus 8e-34 148

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