C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cellular retinoic acid binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000621784 CRABP2-201 ENSG00000143320 9606 - 1:156699618-156705816 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainHeartKidneyOvaryPlacentaTestisENST00000621784
Transcript ID Adrenal Brain Heart Kidney Ovary Placenta Testis
ENST00000621784 1.258±0.00 0.685±0.00 0.185±0.00 0.179±0.00 6.904±0.47 12.906±0.00 1.016±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JO CIL_0008JO_0001 VISTA 1:156202708-156805613
CIL_000850 CIL_000850_0001 VISTA 1:156360457-156965492

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001972 IEA retinoic acid binding
GO:0005215 IEA transporter activity
GO:0005501 TAS retinoid binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0006810 IEA transport
GO:0007165 TAS signal transduction
GO:0008544 TAS epidermis development
GO:0016918 IEA retinal binding
GO:0019841 IEA retinol binding
GO:0035115 IEA embryonic forelimb morphogenesis
GO:0042573 IEA retinoic acid metabolic process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005019 Crabp2-001 protein_coding Mus_musculus 0 538
ENSMUST00000163040 Crabp2-002 retained_intron Mus_musculus 0 333

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