C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, beta 1 subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000622445 CACNB1-201 ENSG00000067191 9606 - 17:39173456-39197703 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000622445
Transcript ID Adipose Adrenal Bladder Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000622445 0.985±0.00 1.240±0.00 0.090±0.00 2.309±0.00 0.210±0.10 0.484±0.00 0.033±0.00 0.724±0.52 1.566±0.35 0.612±0.00 1.860±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SN CIL_0008SN_0001 VISTA 17:39110111-39710718
CIL_0000TK CIL_0000TK_0002 CGP 17:39156894-39197703
CIL_0000TJ CIL_0000TJ_0002 CGP 17:39173456-39204727

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005245 IEA voltage-gated calcium channel activity
GO:0005515 IEA protein binding
GO:0005891 IEA voltage-gated calcium channel complex
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000017552 Cacnb1-001 protein_coding Mus_musculus 0 3338
ENSMUST00000107562 Cacnb1-004 protein_coding Mus_musculus 0 1919
ENSMUST00000135462 Cacnb1-006 processed_transcript Mus_musculus 0 1072
ENSMUST00000103144 Cacnb1-201 protein_coding Mus_musculus 0 1046
ENSMUST00000092736 Cacnb1-002 protein_coding Mus_musculus 0 1046
ENSMUST00000107561 Cacnb1-003 protein_coding Mus_musculus 0 963
ENSMUST00000124170 Cacnb1-005 processed_transcript Mus_musculus 0 468

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