C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L13a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000624069 RPL13A-013 ENSG00000142541 9606 + 19:49487603-49492308 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartKidneyLiverLungMuscleTestisENST00000624069
Transcript ID Adrenal Brain Colon Heart Kidney Liver Lung Muscle Testis
ENST00000624069 356.015±0.00 52.507±0.00 260.738±0.00 127.100±0.00 239.257±0.00 117.648±0.00 493.871±0.00 130.357±0.00 93.503±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000150350 Rpl13a-001 protein_coding Mus_musculus 0 750
ENSMUST00000124300 Rpl13a-011 protein_coding Mus_musculus 0 678
ENSMUST00000102669 Rpl13a-009 nonsense_mediated_decay Mus_musculus 0 647
ENSMUST00000117851 Gm11478-001 processed_pseudogene Mus_musculus 0 619
ENSMUST00000125074 Rpl13a-006 processed_transcript Mus_musculus 0 582
ENSMUST00000142239 Rpl13a-010 processed_transcript Mus_musculus 0 355
ENSMUST00000131697 Rpl13a-005 retained_intron Mus_musculus 0 307
ENSMUST00000141807 Rpl13a-002 processed_transcript Mus_musculus 0 305
ENSMUST00000138887 Rpl13a-007 retained_intron Mus_musculus 9e-29 132
ENSMUST00000152970 Rpl13a-003 retained_intron Mus_musculus 9e-24 115

Loading