C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000011564 sfpq 7955 + 19:40986270-41015733 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000017359 sfpq-001 40986383-41000248 protein_coding
  ENSDART00000123647 sfpq-004 40987301-40988413 protein_coding
  ENSDART00000134873 sfpq-003 41012843-41015712 retained_intron
  ENSDART00000151438 sfpq-002 40986270-41015733 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000017359ENSDART00000134873ENSDART00000151438
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000017359 53.238±9.38 45.392±20.22 42.755±5.84 3.917±0.00 13.977±0.00
ENSDART00000134873 110.009±0.00 20.778±14.17 6.460±0.52 N/A 19.508±0.00
ENSDART00000151438 10.300±0.00 N/A N/A 2.228±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0007420 IMP brain development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000116560 SFPQ splicing factor proline/glutamine-rich protein_coding Homo_sapiens
ENSMUSG00000028820 Sfpq splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) protein_coding Mus_musculus

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