C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: survival motor neuron 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000018494 smn1 7955 - 5:45416927-45424192 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000028099 smn1-001 45416927-45424192 protein_coding
  ENSDART00000127956 smn1-201 45416965-45424165 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000028099ENSDART00000127956
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000028099 3.333±2.79 2.199±0.25 18.238±0.00 1.174±0.00 3.043±0.00
ENSDART00000127956 1.529±0.00 9.890±1.38 N/A 1.413±0.00 3.653±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0005681 IEA spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0007409 IMP axonogenesis
GO:0007528 IMP neuromuscular junction development
GO:0008380 IEA RNA splicing
GO:0016358 IMP dendrite development
GO:0030018 IEA Z disc
GO:0048675 IGI axon extension
GO:0048936 IMP peripheral nervous system neuron axonogenesis
GO:0061564 IMP axon development
GO:0097504 IEA Gemini of coiled bodies

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000172062 SMN1 survival of motor neuron 1, telomeric protein_coding Homo_sapiens
ENSG00000205571 SMN2 survival of motor neuron 2, centromeric protein_coding Homo_sapiens
ENSMUSG00000021645 Smn1 survival motor neuron 1 protein_coding Mus_musculus

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