C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: survival motor neuron 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000028099 smn1-001 ENSDARG00000018494 7955 - 5:45416927-45424192 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000028099
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000028099 3.333±2.79 2.199±0.25 18.238±0.00 1.174±0.00 3.043±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0005681 IEA spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0007409 IMP axonogenesis
GO:0007528 IMP neuromuscular junction development
GO:0008380 IEA RNA splicing
GO:0016358 IMP dendrite development
GO:0030018 IEA Z disc
GO:0048675 IGI axon extension
GO:0048936 IMP peripheral nervous system neuron axonogenesis
GO:0061564 IMP axon development
GO:0097504 IEA Gemini of coiled bodies

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022147 Smn1-001 protein_coding Mus_musculus 3e-19 100
ENSMUST00000125572 Smn1-007 retained_intron Mus_musculus 2e-18 97
ENSMUST00000134514 Smn1-002 retained_intron Mus_musculus 1e-19 100
ENSMUST00000140745 Smn1-006 nonsense_mediated_decay Mus_musculus 4e-18 95
ENST00000351205 SMN1-201 protein_coding Homo_sapiens 9e-18 95
ENST00000380707 SMN1-001 protein_coding Homo_sapiens 2e-17 95
ENST00000380741 SMN2-201 protein_coding Homo_sapiens 9e-18 95
ENST00000380742 SMN2-002 protein_coding Homo_sapiens 1e-17 95
ENST00000380743 SMN2-001 protein_coding Homo_sapiens 2e-17 95
ENST00000503079 SMN1-008 protein_coding Homo_sapiens 1e-17 95
ENST00000503678 SMN2-006 retained_intron Homo_sapiens 8e-18 95
ENST00000506163 SMN1-007 protein_coding Homo_sapiens 2e-17 95
ENST00000506239 SMN1-003 nonsense_mediated_decay Homo_sapiens 2e-17 95
ENST00000506734 SMN2-003 nonsense_mediated_decay Homo_sapiens 2e-17 95
ENST00000511812 SMN2-004 protein_coding Homo_sapiens 9e-18 95
ENST00000514951 SMN1-002 protein_coding Homo_sapiens 1e-17 95
ENST00000610814 SMN2-203 protein_coding Homo_sapiens 9e-18 95
ENST00000611442 SMN2-206 protein_coding Homo_sapiens 8e-18 95
ENST00000612446 SMN2-003 nonsense_mediated_decay Homo_sapiens 2e-17 95
ENST00000612974 SMN1-202 protein_coding Homo_sapiens 9e-18 95
ENST00000614240 SMN2-202 protein_coding Homo_sapiens 8e-18 95
ENST00000614610 SMN1-203 protein_coding Homo_sapiens 9e-18 95
ENST00000614773 SMN1-204 protein_coding Homo_sapiens 8e-18 95
ENST00000618251 SMN2-001 protein_coding Homo_sapiens 2e-17 95
ENST00000618661 SMN2-207 protein_coding Homo_sapiens 9e-18 95
ENST00000619658 SMN2-002 protein_coding Homo_sapiens 9e-18 95
ENST00000622158 SMN2-204 protein_coding Homo_sapiens 8e-18 95
ENST00000622739 SMN2-205 protein_coding Homo_sapiens 9e-18 95
ENST00000624634 SMN2-007 protein_coding Homo_sapiens 1e-17 95

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