C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000028937 taf1b 7955 - 20:29539378-29558918 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000049224 taf1b-201 29539382-29558847 protein_coding
  ENSDART00000062377 taf1b-001 29539378-29558918 protein_coding
  ENSDART00000153446 taf1b-002 29553099-29555739 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000049224ENSDART00000062377
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000049224 1.451±0.50 0.973±0.31 3.197±0.00 0.444±0.00 0.415±0.00
ENSDART00000062377 0.611±0.11 0.518±0.17 N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001164 ISS RNA polymerase I CORE element sequence-specific DNA binding
GO:0001187 ISS RNA polymerase I CORE element sequence-specific DNA binding transcription factor recruiting transcription factor activity
GO:0001189 ISS RNA polymerase I transcriptional preinitiation complex assembly at the promoter for the nuclear large rRNA transcript
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0006356 ISS regulation of transcription from RNA polymerase I promoter
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000115750 TAF1B TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa protein_coding Homo_sapiens
ENSMUSG00000059669 Taf1b TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B protein_coding Mus_musculus

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