C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000115750 TAF1B 9606 + 2:9843354-9934416 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000263663 TAF1B-001 9843354-9934416 protein_coding
  ENST00000402170 TAF1B-009 9843482-9868764 processed_transcript
  ENST00000404869 TAF1B-008 9843497-9852124 processed_transcript
  ENST00000416181 TAF1B-007 9843527-9849407 nonsense_mediated_decay
  ENST00000434858 TAF1B-002 9843525-9933946 nonsense_mediated_decay
  ENST00000469895 TAF1B-003 9843585-9868416 processed_transcript
  ENST00000480197 TAF1B-005 9843703-9868376 processed_transcript
  ENST00000490432 TAF1B-004 9843723-9852114 processed_transcript
  ENST00000492648 TAF1B-010 9875998-9913709 protein_coding
  ENST00000497182 TAF1B-006 9843519-9845820 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263663ENST00000416181ENST00000434858ENST00000480197
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263663 1.715±0.00 1.292±0.00 0.340±0.00 1.186±0.00 2.154±0.75 1.573±0.71 0.397±0.21 3.885±0.00 0.706±0.00 1.929±0.27 1.207±0.00 1.357±0.67 1.750±0.55 3.114±2.78
ENST00000416181 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.289±0.00 N/A N/A N/A
ENST00000434858 0.773±0.00 1.032±0.00 N/A 0.786±0.00 0.804±0.00 N/A N/A N/A N/A N/A N/A 0.712±0.00 N/A N/A
ENST00000480197 N/A N/A N/A N/A 1.926±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001MN CIL_0001MN_0001 CGP 2:9843354-10002277

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001164 IDA RNA polymerase I CORE element sequence-specific DNA binding
GO:0001187 IDA RNA polymerase I CORE element sequence-specific DNA binding transcription factor recruiting transcription factor activity
GO:0001189 IDA RNA polymerase I transcriptional preinitiation complex assembly at the promoter for the nuclear large rRNA transcript
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 NAS nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 NAS transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006360 TAS transcription from RNA polymerase I promoter
GO:0006361 TAS transcription initiation from RNA polymerase I promoter
GO:0006362 TAS transcription elongation from RNA polymerase I promoter
GO:0006363 TAS termination of RNA polymerase I transcription
GO:0010467 TAS gene expression
GO:0017025 TAS TBP-class protein binding
GO:0046872 IEA metal ion binding
GO:0070062 IDA extracellular vesicular exosome
GO:0070860 IDA RNA polymerase I core factor complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000028937 taf1b TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B protein_coding Danio_rerio
ENSMUSG00000059669 Taf1b TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B protein_coding Mus_musculus

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