C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: high-mobility group box 1b
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000030479 hmgb1b 7955 - 15:30810617-30814135 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000108983 hmgb1b-201 30810620-30814116 protein_coding
  ENSDART00000153978 hmgb1b-005 30811614-30812370 protein_coding
  ENSDART00000156047 hmgb1b-001 30810617-30814135 protein_coding
  ENSDART00000156072 hmgb1b-004 30811097-30814116 protein_coding
  ENSDART00000156335 hmgb1b-003 30811758-30814066 retained_intron
  ENSDART00000156427 hmgb1b-002 30810955-30814110 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000108983ENSDART00000156047ENSDART00000156427
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000108983 34.791±24.08 59.652±31.16 36.593±24.43 0.422±0.00 N/A
ENSDART00000156047 110.097±59.58 20.344±15.13 30.530±0.00 N/A 11.591±0.00
ENSDART00000156427 N/A 6.575±0.00 N/A 1.020±0.00 5.599±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000189403 HMGB1 high mobility group box 1 protein_coding Homo_sapiens
ENSMUSG00000066551 Hmgb1 high mobility group box 1 protein_coding Mus_musculus

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