C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: T-box 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000031891 tbx1 7955 + 5:16906410-16919398 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000040826 tbx1-001 16907336-16919398 protein_coding
  ENSDART00000144915 tbx1-002 16906410-16918791 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000040826ENSDART00000144915
Transcript ID Brain Heart Kidney Muscle
ENSDART00000040826 N/A 0.230±0.04 0.400±0.25 N/A
ENSDART00000144915 0.037±0.00 0.096±0.00 N/A 0.647±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003KU CIL_0003KU_0001 CGP 5:16906410-16987424

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001755 IMP neural crest cell migration
GO:0001947 IMP heart looping
GO:0003143 IMP embryonic heart tube morphogenesis
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0007275 IEA multicellular organismal development
GO:0007507 ISS heart development
GO:0042471 IMP ear morphogenesis
GO:0042803 ISS protein homodimerization activity
GO:0043282 IMP pharyngeal muscle development
GO:0043565 ISS sequence-specific DNA binding
GO:0043583 IMP ear development
GO:0048538 ISS thymus development
GO:0048703 ISS embryonic viscerocranium morphogenesis
GO:0048752 IMP semicircular canal morphogenesis
GO:0055007 IMP cardiac muscle cell differentiation
GO:0060017 ISS parathyroid gland development
GO:0060023 ISS soft palate development
GO:0060037 IMP pharyngeal system development
GO:0060536 IMP cartilage morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000184058 TBX1 T-box 1 protein_coding Homo_sapiens
ENSMUSG00000009097 Tbx1 T-box 1 protein_coding Mus_musculus

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