C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear receptor subfamily 1, group d, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000033160 nr1d1 7955 + 3:23779893-23787464 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000040468 nr1d1-201 23780061-23787455 protein_coding
  ENSDART00000126282 nr1d1-001 23779893-23787464 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000040468ENSDART00000126282
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000040468 3.062±0.72 1.856±0.00 0.120±0.00 0.933±0.00 1.380±0.00
ENSDART00000126282 6.318±5.33 2.030±0.00 4.388±4.28 0.834±0.00 4.408±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0001078 IMP RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004887 IEA thyroid hormone receptor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0006366 IMP transcription from RNA polymerase II promoter
GO:0008270 IEA zinc ion binding
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000126368 NR1D1 nuclear receptor subfamily 1, group D, member 1 protein_coding Homo_sapiens
ENSMUSG00000020889 Nr1d1 nuclear receptor subfamily 1, group D, member 1 protein_coding Mus_musculus

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