C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear receptor subfamily 1, group D, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020889 Nr1d1 10090 - 11:98767932-98775333 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000064941 Nr1d1-001 98767932-98775333 protein_coding
  ENSMUST00000139220 Nr1d1-002 98769347-98770426 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000064941
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000064941 49.815±34.92 165.014±27.33 62.107±7.45 43.858±0.00 49.597±16.74 36.152±4.43 55.080±12.88 44.568±6.62 17.483±7.02 77.572±34.23 27.576±18.35 30.869±8.85 0.986±0.49 8.564±2.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098Y CIL_00098Y_0002 VISTA 11:98447152-99051430
CIL_0002KL CIL_0002KL_0002 CGP 11:98704591-98769006
CIL_0002L8 CIL_0002L8_0002 CGP 11:98740638-98775333
CIL_0002GG CIL_0002GG_0002 CGP 11:98767932-98807859

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IEA nuclear chromatin
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001046 IDA core promoter sequence-specific DNA binding
GO:0001078 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0001222 ISS transcription corepressor binding
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005978 IMP glycogen biosynthetic process
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0007623 IDA circadian rhythm
GO:0008270 IEA zinc ion binding
GO:0010498 IDA proteasomal protein catabolic process
GO:0010871 IEA negative regulation of receptor biosynthetic process
GO:0019216 IMP regulation of lipid metabolic process
GO:0020037 IEA heme binding
GO:0030154 IEA cell differentiation
GO:0030425 IDA dendrite
GO:0032922 IMP circadian regulation of gene expression
GO:0034144 IEA negative regulation of toll-like receptor 4 signaling pathway
GO:0035947 ISS regulation of gluconeogenesis by regulation of transcription from RNA polymerase II promoter
GO:0042752 IMP regulation of circadian rhythm
GO:0043197 IDA dendritic spine
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0044212 IEA transcription regulatory region DNA binding
GO:0044321 IDA response to leptin
GO:0045598 IMP regulation of fat cell differentiation
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0060086 IMP circadian temperature homeostasis
GO:0061178 IMP regulation of insulin secretion involved in cellular response to glucose stimulus
GO:0061469 IMP regulation of type B pancreatic cell proliferation
GO:0070859 IMP positive regulation of bile acid biosynthetic process
GO:0071222 IEA cellular response to lipopolysaccharide
GO:2000188 IMP regulation of cholesterol homeostasis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000033160 nr1d1 nuclear receptor subfamily 1, group d, member 1 protein_coding Danio_rerio
ENSG00000126368 NR1D1 nuclear receptor subfamily 1, group D, member 1 protein_coding Homo_sapiens

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