C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sonic hedgehog b
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000038867 shhb 7955 - 2:29765373-29770264 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000056747 shhb-001 29765373-29770264 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyMuscleENSDART00000056747
Transcript ID Brain Kidney Muscle
ENSDART00000056747 0.599±0.12 0.045±0.00 0.038±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006DC CIL_0006DC_0001 CGP 2:29710422-29770264

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005576 IEA extracellular region
GO:0005615 IEA extracellular space
GO:0005886 IEA plasma membrane
GO:0006508 IEA proteolysis
GO:0007154 IEA cell communication
GO:0007267 IEA cell-cell signaling
GO:0007275 IEA multicellular organismal development
GO:0008233 IEA peptidase activity
GO:0016020 IEA membrane
GO:0016787 IEA hydrolase activity
GO:0030182 IMP neuron differentiation
GO:0030900 IMP forebrain development
GO:0042063 IGI gliogenesis
GO:0048663 IGI neuron fate commitment
GO:0048702 IGI embryonic neurocranium morphogenesis
GO:0048703 IGI embryonic viscerocranium morphogenesis
GO:0055002 IGI striated muscle cell development
GO:0060956 IGI endocardial cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000164690 SHH sonic hedgehog protein_coding Homo_sapiens
ENSMUSG00000002633 Shh sonic hedgehog protein_coding Mus_musculus

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