C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006DC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000094896-ENSDARG00000038867 CGP 7955 2:29710422-29770264
GeneTranscriptPositionBiotype
ENSDARG00000003757 (cnpy1)
canopy1 		ENSDART00000020792 (cnpy1-001) 29701087-29710868 protein_coding
ENSDART00000146968 (cnpy1-002) 29701090-29703529 processed_transcript
ENSDARG00000038867 (shhb)
sonic hedgehog b 		ENSDART00000056747 (shhb-001) 29765373-29770264 protein_coding
ENSDARG00000094896 (RBM33)
RNA binding motif protein 33 		ENSDART00000138050 (RBM33-002) 29711482-29762464 protein_coding
ENSDART00000139566 (RBM33-004) 29711875-29741444 protein_coding
ENSDART00000141026 (RBM33-003) 29711493-29717790 protein_coding
ENSDART00000151841 (RBM33-006) 29747135-29762469 protein_coding
ENSDART00000151848 (RBM33-005) 29711889-29739949 protein_coding
ENSDART00000151906 (RBM33-001) 29710422-29739917 protein_coding
CIL_0006DC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000184863-ENSG00000164690 CGP 9606 7:155644451-155812273
GeneTranscriptPositionBiotype
ENSG00000164690 (SHH)
sonic hedgehog 		ENST00000297261 (SHH-001) 155799986-155812273 protein_coding
ENST00000430104 (SHH-003) 155800040-155809072 protein_coding
ENST00000435425 (SHH-004) 155800050-155809072 nonsense_mediated_decay
ENST00000441114 (SHH-005) 155800039-155809072 nonsense_mediated_decay
ENST00000472308 (SHH-002) 155806582-155807370 processed_transcript
ENSG00000184863 (RBM33)
RNA binding motif protein 33 		ENST00000287912 (RBM33-008) 155644451-155701183 protein_coding
ENST00000307403 (RBM33-009) 155672880-155745720 nonsense_mediated_decay
ENST00000341148 (RBM33-001) 155746586-155781485 protein_coding
ENST00000392755 (RBM33-004) 155766556-155775460 protein_coding
ENST00000392759 (RBM33-005) 155644702-155701490 protein_coding
ENST00000392761 (RBM33-003) 155700891-155766896 protein_coding
ENST00000401878 (RBM33-007) 155644679-155781479 protein_coding
ENST00000438356 (RBM33-002) 155746419-155766556 protein_coding
ENST00000440108 (RBM33-010) 155680669-155737593 protein_coding
ENST00000486747 (RBM33-006) 155706814-155718435 processed_transcript
ENSG00000216895 (AC009403.2)
 ENST00000401694 (AC009403.2-001) 155611231-155644401 antisense
ENST00000460022 (AC009403.2-005) 155642264-155644377 antisense
ENST00000469539 (AC009403.2-002) 155643201-155644406 antisense
ENST00000472015 (AC009403.2-004) 155643468-155645205 antisense
ENST00000474963 (AC009403.2-003) 155643084-155644406 antisense
CIL_0006DC_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000048271-ENSMUSG00000002633 CGP 10090 5:28317121-28467101
GeneTranscriptPositionBiotype
ENSMUSG00000002633 (Shh)
sonic hedgehog 		ENSMUST00000002708 (Shh-001) 28456815-28467101 protein_coding
ENSMUSG00000048271 (Rbm33)
RNA binding motif protein 33 		ENSMUST00000030920 (Rbm33-001) 28317202-28353664 protein_coding
ENSMUST00000059644 (Rbm33-201) 28317189-28419242 protein_coding
ENSMUST00000090355 (Rbm33-002) 28317121-28352868 protein_coding
ENSMUST00000114884 (Rbm33-003) 28317177-28419244 protein_coding
ENSMUST00000133313 (Rbm33-004) 28410661-28414029 protein_coding
ENSMUST00000144967 (Rbm33-005) 28394632-28413677 protein_coding
ENSMUSG00000097453 (Gm26894)
predicted gene, 26894 		ENSMUST00000180828 (Gm26894-201) 28466374-28480973 lincRNA
ENSMUSG00000097726 (9530036O11Rik)
RIKEN cDNA 9530036O11Rik 		ENSMUST00000180878 (9530036O11Rik-201) 28458274-28933995 lincRNA
ENSMUST00000181202 (9530036O11Rik-202) 28466984-28719209 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006DC_0001ENSDARG00000003757ENSDART00000020792ENSDART00000146968ENSDARG00000038867ENSDART00000056747ENSDARG00000094896ENSDART00000138050ENSDART00000139566ENSDART00000141026ENSDART00000151841ENSDART00000151848ENSDART00000151906CIL_0006DC_0002ENSG00000164690ENST00000297261ENST00000430104ENST00000435425ENST00000441114ENST00000472308ENSG00000184863ENST00000287912ENST00000307403ENST00000341148ENST00000392755ENST00000392759ENST00000392761ENST00000401878ENST00000438356ENST00000440108ENST00000486747ENSG00000216895ENST00000401694ENST00000460022ENST00000469539ENST00000472015ENST00000474963CIL_0006DC_0003ENSMUSG00000002633ENSMUST00000002708ENSMUSG00000048271ENSMUST00000030920ENSMUST00000059644ENSMUST00000090355ENSMUST00000114884ENSMUST00000133313ENSMUST00000144967ENSMUSG00000097453ENSMUST00000180828ENSMUSG00000097726ENSMUST00000180878ENSMUST00000181202
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006DC_0001ENSDARG00000003757ENSDART00000020792ENSDART00000146968ENSDARG00000038867ENSDART00000056747ENSDARG00000094896ENSDART00000138050ENSDART00000141026ENSDART00000151841ENSDART00000151848ENSDART00000151906CIL_0006DC_0002ENSG00000164690ENST00000297261ENST00000430104ENSG00000184863ENST00000287912ENST00000341148ENST00000392761ENST00000401878ENSG00000216895ENST00000401694ENST00000460022ENST00000469539ENST00000472015ENST00000474963CIL_0006DC_0003ENSMUSG00000002633ENSMUST00000002708ENSMUSG00000048271ENSMUST00000030920ENSMUST00000059644ENSMUST00000090355ENSMUST00000114884ENSMUSG00000097453ENSMUST00000180828ENSMUSG00000097726ENSMUST00000180878ENSMUST00000181202
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000003757 ENSDART00000020792 N/A N/A N/A 4.857±1.50 N/A N/A 6.550±1.05 16.759±0.00 1.629±0.00 N/A 1.472±0.00 N/A N/A N/A
ENSDART00000146968 N/A N/A N/A N/A N/A N/A 12.133±1.52 17.706±2.17 N/A N/A N/A N/A N/A N/A
ENSDARG00000038867 ENSDART00000056747 N/A N/A N/A 0.599±0.12 N/A N/A N/A 0.045±0.00 N/A N/A 0.038±0.00 N/A N/A N/A
ENSDARG00000094896 ENSDART00000138050 N/A N/A N/A 0.186±0.15 N/A N/A 0.036±0.00 3.491±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000139566 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000141026 N/A N/A N/A N/A N/A N/A 0.107±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000151841 N/A N/A N/A N/A N/A N/A N/A 0.352±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000151848 N/A N/A N/A 0.157±0.00 N/A N/A 0.069±0.00 3.926±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000151906 N/A N/A N/A 0.307±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000164690 ENST00000297261 0.090±0.00 N/A 0.129±0.00 0.333±0.00 0.258±0.00 N/A 0.011±0.00 0.720±0.29 N/A 0.362±0.00 0.007±0.00 0.728±0.79 0.014±0.00 0.193±0.15
ENST00000430104 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.044±0.00
ENST00000435425 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441114 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472308 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000184863 ENST00000287912 N/A N/A 18.747±0.00 19.834±0.00 21.245±0.00 18.669±0.00 N/A N/A 19.892±0.00 N/A 5.063±0.00 9.896±0.00 3.465±3.03 11.149±0.00
ENST00000307403 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000341148 N/A 3.486±0.00 N/A N/A 2.371±0.00 N/A 0.576±0.00 1.751±0.00 0.564±0.00 3.575±0.00 N/A 3.298±1.09 0.240±0.00 N/A
ENST00000392755 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000392759 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000392761 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.816±0.00 N/A
ENST00000401878 3.940±0.00 4.570±0.00 2.291±0.00 3.278±2.13 2.853±1.10 2.600±0.06 1.475±1.13 2.191±0.50 1.764±0.37 3.806±1.93 4.752±0.00 2.361±0.08 1.053±0.29 3.962±1.98
ENST00000438356 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440108 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486747 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000216895 ENST00000401694 0.752±0.00 N/A 1.719±0.00 1.436±0.00 1.384±0.00 N/A N/A N/A 3.027±0.00 N/A N/A 0.388±0.00 N/A N/A
ENST00000460022 N/A 1.501±0.00 N/A 0.189±0.01 0.425±0.28 0.305±0.01 0.703±0.00 3.973±0.00 0.646±0.00 0.546±0.00 N/A 0.652±0.25 0.395±0.17 1.071±0.29
ENST00000469539 0.328±0.00 1.603±0.00 N/A 0.692±0.00 0.770±0.00 0.374±0.00 N/A N/A N/A 0.213±0.08 N/A 0.393±0.00 1.092±0.41 3.536±2.20
ENST00000472015 N/A N/A N/A N/A N/A N/A N/A N/A 3.014±0.00 N/A N/A N/A 0.764±0.00 N/A
ENST00000474963 0.246±0.00 N/A N/A N/A N/A N/A N/A N/A 0.389±0.00 N/A N/A 0.159±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000002633 ENSMUST00000002708 0.109±0.07 11.250±6.24 31.060±2.27 1.155±0.43 N/A 0.322±0.06 N/A 0.382±0.03 0.024±0.01 2.459±1.27 0.021±0.00 0.040±0.02 0.078±0.09 0.123±0.14
ENSMUSG00000048271 ENSMUST00000030920 N/A N/A N/A 3.648±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 3.133±0.00 5.035±0.00
ENSMUST00000059644 1.436±0.00 7.682±2.25 4.541±0.80 6.858±0.99 2.014±0.55 N/A N/A 2.027±0.00 2.470±0.65 N/A 5.214±1.17 5.899±1.86 4.117±1.44 2.456±0.30
ENSMUST00000090355 N/A 29.790±4.42 N/A 11.760±0.00 N/A N/A N/A N/A N/A N/A N/A 16.157±0.00 14.309±2.41 8.822±0.00
ENSMUST00000114884 6.901±2.40 6.876±4.03 4.718±1.03 8.803±3.15 10.759±5.10 10.893±3.99 3.669±0.90 7.050±0.75 4.837±1.07 10.262±1.82 0.962±0.00 11.748±4.02 2.640±0.28 5.741±2.22
ENSMUST00000133313 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144967 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000097453 ENSMUST00000180828 N/A N/A 19.351±2.45 2.556±0.00 0.090±0.03 N/A N/A 0.236±0.04 0.047±0.03 N/A N/A 0.102±0.07 0.054±0.04 0.158±0.00
ENSMUSG00000097726 ENSMUST00000180878 0.042±0.00 16.598±0.00 N/A N/A N/A N/A 0.042±0.01 0.400±0.04 0.007±0.00 N/A N/A N/A N/A 0.036±0.00
ENSMUST00000181202 0.017±0.00 N/A N/A 0.113±0.00 0.023±0.00 N/A 0.026±0.00 0.058±0.01 0.014±0.00 N/A N/A 0.055±0.03 0.025±0.02 0.094±0.06

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