C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: alkB, alkylation repair homolog 5 (E. coli)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000063003 alkbh5 7955 + 1:7584837-7592679 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000091683 alkbh5-001 7584837-7592679 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyLiverMuscleENSDART00000091683
Transcript ID Heart Kidney Liver Muscle
ENSDART00000091683 6.889±0.00 2.644±0.00 1.254±0.00 5.820±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00058Q CIL_00058Q_0001 CGP 1:7518155-7592679

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001666 ISS response to hypoxia
GO:0005634 ISS nucleus
GO:0006397 ISS mRNA processing
GO:0006406 ISS mRNA export from nucleus
GO:0007283 ISS spermatogenesis
GO:0016491 IEA oxidoreductase activity
GO:0016607 ISS nuclear speck
GO:0016706 ISS oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0035515 ISS oxidative RNA demethylase activity
GO:0035553 ISS oxidative single-stranded RNA demethylation
GO:0046872 IEA metal ion binding
GO:0051213 IEA dioxygenase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000091542 ALKBH5 AlkB family member 5, RNA demethylase protein_coding Homo_sapiens
ENSMUSG00000042650 Alkbh5 alkB, alkylation repair homolog 5 (E. coli) protein_coding Mus_musculus

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