C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen type II, alpha-1a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000069093 col2a1a 7955 + 8:21733438-21757491 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000091307 col2a1a-201 21733441-21757490 protein_coding
  ENSDART00000100234 col2a1a-001 21733438-21757491 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000091307ENSDART00000100234
Transcript ID Brain Heart Kidney Muscle
ENSDART00000091307 0.222±0.14 0.014±0.00 0.155±0.11 0.059±0.00
ENSDART00000100234 0.193±0.00 N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005201 IEA extracellular matrix structural constituent
GO:0005515 IEA protein binding
GO:0005581 IEA collagen
GO:0030903 IGI notochord development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000139219 COL2A1 collagen, type II, alpha 1 protein_coding Homo_sapiens
ENSMUSG00000022483 Col2a1 collagen, type II, alpha 1 protein_coding Mus_musculus

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