C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen type II, alpha-1a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000100234 col2a1a-001 ENSDARG00000069093 7955 + 8:21733438-21757491 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENSDART00000100234
Transcript ID Brain
ENSDART00000100234 0.193±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005201 IEA extracellular matrix structural constituent
GO:0005515 IEA protein binding
GO:0005581 IEA collagen
GO:0030903 IGI notochord development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001547 Col1a1-001 protein_coding Mus_musculus 0 1098
ENSMUST00000023123 Col2a1-001 protein_coding Mus_musculus 0 2228
ENSMUST00000102765 Col23a1-001 protein_coding Mus_musculus 0.0001 55
ENSMUST00000127879 Col2a1-004 processed_transcript Mus_musculus 0.00000000000006 82
ENSMUST00000131560 Col2a1-009 protein_coding Mus_musculus 0.0000000000006 79
ENSMUST00000140064 Col2a1-003 retained_intron Mus_musculus 0.000003 57
ENST00000225964 COL1A1-001 protein_coding Homo_sapiens 0 1166
ENST00000510710 COL1A1-018 retained_intron Homo_sapiens 2e-31 141

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