C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SRY-box containing gene 1a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000069866 sox1a 7955 + 9:22756078-22758006 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000102021 sox1a-001 22756078-22758006 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMuscleENSDART00000102021
Transcript ID Brain Muscle
ENSDART00000102021 10.906±3.53 0.536±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0005667 IC transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0007275 IEA multicellular organismal development
GO:0051091 IDA positive regulation of sequence-specific DNA binding transcription factor activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000182968 SOX1 SRY (sex determining region Y)-box 1 protein_coding Homo_sapiens
ENSMUSG00000096014 Sox1 SRY (sex determining region Y)-box 1 protein_coding Mus_musculus

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