C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SRY (sex determining region Y)-box 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000096014 Sox1 10090 + 8:12395295-12400126 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000180353 Sox1-001 12395295-12400126 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartLiverLungOvaryPlacentaTestisENSMUST00000180353
Transcript ID Adrenal Brain Colon Heart Liver Lung Ovary Placenta Testis
ENSMUST00000180353 0.012±0.01 8.552±5.00 0.055±0.01 0.006±0.00 0.029±0.04 0.005±0.00 0.013±0.00 0.004±0.00 0.717±0.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SC CIL_0008SC_0002 VISTA 8:12162372-12763356
CIL_0007MI CIL_0007MI_0002 UCNEbase 8:12327809-12463108

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001046 IEA core promoter sequence-specific DNA binding
GO:0001764 IMP neuron migration
GO:0002089 IMP lens morphogenesis in camera-type eye
GO:0003677 IDA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0021521 IMP ventral spinal cord interneuron specification
GO:0021879 IMP forebrain neuron differentiation
GO:0021884 IMP forebrain neuron development
GO:0030900 IMP forebrain development
GO:0043565 IDA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008131 sox1b SRY-box containing gene 1b protein_coding Danio_rerio
ENSDARG00000069866 sox1a SRY-box containing gene 1a protein_coding Danio_rerio
ENSG00000182968 SOX1 SRY (sex determining region Y)-box 1 protein_coding Homo_sapiens

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