C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sequestosome 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000075014 sqstm1 7955 + 14:14448389-14453802 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000113012 sqstm1-201 14448436-14453796 protein_coding
  ENSDART00000134366 sqstm1-004 14452413-14453631 retained_intron
  ENSDART00000135589 sqstm1-005 14448437-14452942 processed_transcript
  ENSDART00000140061 sqstm1-001 14448389-14453802 protein_coding
  ENSDART00000141840 sqstm1-003 14451568-14452664 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000113012ENSDART00000140061
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000113012 N/A 55.720±46.21 39.313±20.50 N/A N/A
ENSDART00000140061 24.676±1.26 29.927±1.40 6.238±0.00 7.497±0.00 18.173±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000XE CIL_0000XE_0001 CGP 14:14166319-14453802
CIL_0000XF CIL_0000XF_0001 CGP 14:14448389-14457584

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000161011 SQSTM1 sequestosome 1 protein_coding Homo_sapiens
ENSMUSG00000015837 Sqstm1 sequestosome 1 protein_coding Mus_musculus

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