C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000075957 smg6 7955 - 10:36608814-36637891 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000108897 smg6-201 36609151-36637891 protein_coding
  ENSDART00000135950 smg6-001 36608814-36637891 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000108897ENSDART00000135950
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000108897 N/A N/A 0.515±0.00 N/A N/A
ENSDART00000135950 3.556±0.00 2.483±0.29 1.347±1.23 0.435±0.00 1.068±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 IDA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0009790 IMP embryo development
GO:0016740 IEA transferase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000070366 SMG6 SMG6 nonsense mediated mRNA decay factor protein_coding Homo_sapiens
ENSMUSG00000038290 Smg6 Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans) protein_coding Mus_musculus

Loading