C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nephronophthisis 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000078261 nphp3 7955 + 24:9413140-9464727 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000110629 nphp3-201 9416109-9464497 protein_coding
  ENSDART00000142460 nphp3-001 9413140-9464727 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000110629ENSDART00000142460
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000110629 0.316±0.00 3.805±2.98 4.550±0.32 0.139±0.00 N/A
ENSDART00000142460 1.044±0.57 1.098±0.89 0.938±0.36 N/A 0.137±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00016N CIL_00016N_0001 CGP 24:9413140-9490660

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003146 IMP heart jogging
GO:0005515 IEA protein binding
GO:0007601 IMP visual perception
GO:0048793 IGI pronephros development
GO:0060026 IMP convergent extension
GO:0060972 IMP left/right pattern formation
GO:0070121 IMP Kupffer's vesicle development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000113971 NPHP3 nephronophthisis 3 (adolescent) protein_coding Homo_sapiens
ENSG00000274810 NPHP3-ACAD11 NPHP3-ACAD11 readthrough (NMD candidate) protein_coding Homo_sapiens
ENSMUSG00000032558 Nphp3 nephronophthisis 3 (adolescent) protein_coding Mus_musculus
ENSMUSG00000101152 NPHP3 predicted gene 28305 protein_coding Mus_musculus

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