C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TAR (HIV-1) RNA binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000079055 TARBP1 (1 of 2) 7955 + 13:39837187-39872524 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000113259 TARBP1 (1 of 2)-201 39837187-39872207 protein_coding
  ENSDART00000132198 TARBP1 (1 of 2)-001 39842486-39852509 protein_coding
  ENSDART00000133636 TARBP1 (1 of 2)-002 39857811-39872524 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000113259ENSDART00000133636
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000113259 0.672±0.10 0.989±0.08 3.734±0.00 1.207±0.00 0.365±0.00
ENSDART00000133636 0.199±0.00 0.429±0.00 N/A N/A 0.431±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005488 IEA binding
GO:0006396 IEA RNA processing
GO:0008173 IEA RNA methyltransferase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000059588 TARBP1 TAR (HIV-1) RNA binding protein 1 protein_coding Homo_sapiens
ENSMUSG00000090290 Gm17296 predicted gene, 17296 protein_coding Mus_musculus

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