C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TAR (HIV-1) RNA binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000059588 TARBP1 9606 - 1:234391313-234479103 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000040877 TARBP1-001 234391313-234479103 protein_coding
  ENST00000462259 TARBP1-003 234391378-234406380 processed_transcript
  ENST00000463793 TARBP1-004 234410404-234420814 processed_transcript
  ENST00000468077 TARBP1-005 234398382-234405993 processed_transcript
  ENST00000471918 TARBP1-009 234391598-234392724 processed_transcript
  ENST00000481183 TARBP1-006 234400251-234410531 processed_transcript
  ENST00000483404 TARBP1-002 234391339-234407955 processed_transcript
  ENST00000484454 TARBP1-007 234398178-234400902 processed_transcript
  ENST00000496673 TARBP1-008 234391410-234401216 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000040877ENST00000462259ENST00000483404ENST00000496673
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000040877 0.710±0.00 N/A 0.473±0.00 N/A 1.978±0.00 1.604±0.00 0.725±0.54 0.971±0.26 0.333±0.00 0.884±0.25 0.911±0.00 3.637±3.50 2.318±0.54 2.368±0.22
ENST00000462259 N/A 3.300±0.00 N/A N/A 1.777±0.00 N/A N/A 1.405±0.00 N/A N/A N/A 4.404±2.14 1.460±0.13 1.352±0.00
ENST00000483404 N/A 2.008±0.00 N/A 0.962±0.00 N/A N/A N/A 0.339±0.15 0.216±0.00 1.003±0.30 N/A 2.171±0.75 N/A 2.678±2.08
ENST00000496673 N/A N/A N/A N/A N/A N/A N/A 2.453±0.00 1.041±0.00 N/A 1.008±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007X4 CIL_0007X4_0001 VISTA 1:234243002-234844954
CIL_0006KD CIL_0006KD_0001 CGP 1:234373456-234479103
CIL_0006KE CIL_0006KE_0001 CGP 1:234391313-234609525

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001510 IEA RNA methylation
GO:0003723 IEA RNA binding
GO:0005488 IEA binding
GO:0005634 TAS nucleus
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006396 IEA RNA processing
GO:0008173 IEA RNA methyltransferase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079055 TARBP1 (1 of 2) TAR (HIV-1) RNA binding protein 1 protein_coding Danio_rerio
ENSDARG00000092550 TARBP1 (2 of 2) TAR (HIV-1) RNA binding protein 1 protein_coding Danio_rerio
ENSMUSG00000090290 Gm17296 predicted gene, 17296 protein_coding Mus_musculus

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