C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TSR3, 20S rRNA accumulation, homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000007520 TSR3 9606 - 16:1349240-1351911 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000007390 TSR3-001 1349240-1351911 protein_coding
  ENST00000566296 TSR3-002 1349426-1351473 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000007390ENST00000566296
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000007390 27.076±0.00 40.620±0.00 2.286±0.00 23.162±12.11 23.040±16.48 15.955±12.39 15.931±11.89 21.935±18.65 14.425±7.93 15.347±11.38 16.235±5.22 28.883±18.28 40.950±14.53 37.812±6.11
ENST00000566296 10.906±0.00 17.772±0.00 N/A N/A 23.945±0.00 12.480±0.00 N/A N/A N/A N/A N/A 12.182±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00031K CIL_00031K_0002 CGP 16:1308880-1349438
CIL_0003FR CIL_0003FR_0002 CGP 16:1349240-1364113

Gene Ontology
GO IDEvidence TypeGO Description
GO:0006364 IEA rRNA processing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038567 tsr3 TSR3, 20S rRNA accumulation, homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000015126 Tsr3 TSR3 20S rRNA accumulation protein_coding Mus_musculus

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