C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 6 (neurotransmitter transporter), member 13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000010379 SLC6A13 9606 - 12:220621-262873 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000343164 SLC6A13-001 220625-262836 protein_coding
  ENST00000436453 SLC6A13-002 259005-262836 protein_coding
  ENST00000445055 SLC6A13-201 220621-262873 protein_coding
  ENST00000534887 SLC6A13-009 237150-238309 retained_intron
  ENST00000536842 SLC6A13-008 236906-262836 retained_intron
  ENST00000539260 SLC6A13-005 237926-262816 nonsense_mediated_decay
  ENST00000539668 SLC6A13-012 222580-224431 processed_transcript
  ENST00000542272 SLC6A13-007 237948-262836 nonsense_mediated_decay
  ENST00000542379 SLC6A13-015 223114-237241 processed_transcript
  ENST00000542947 SLC6A13-010 224468-226971 retained_intron
  ENST00000543722 SLC6A13-011 224026-226679 retained_intron
  ENST00000546319 SLC6A13-004 235194-262873 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000343164ENST00000436453ENST00000445055ENST00000534887ENST00000539260ENST00000539668ENST00000542272ENST00000542379ENST00000542947ENST00000543722
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000343164 N/A N/A N/A 1.140±0.48 N/A N/A 13.443±0.00 N/A 0.118±0.08 N/A 0.101±0.00 0.038±0.00 N/A
ENST00000436453 0.022±0.00 0.056±0.00 20.231±0.00 0.775±0.00 0.084±0.00 0.051±0.00 7.892±0.00 N/A N/A 0.153±0.00 0.087±0.04 0.049±0.00 0.643±0.00
ENST00000445055 N/A 0.034±0.00 9.888±0.00 0.714±0.00 0.012±0.00 0.024±0.00 N/A 1.309±0.00 N/A N/A N/A N/A 0.174±0.00
ENST00000534887 N/A N/A N/A N/A N/A 0.175±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000539260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.372±0.00 0.026±0.00 N/A
ENST00000539668 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.166±0.00 N/A
ENST00000542272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.892±0.00
ENST00000542379 N/A 0.114±0.00 N/A 2.823±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542947 N/A N/A N/A N/A N/A 0.197±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000543722 N/A N/A N/A N/A N/A N/A N/A N/A 0.367±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083Y CIL_00083Y_0001 VISTA 12:106900-709490

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005332 IEA gamma-aminobutyric acid:sodium symporter activity
GO:0005886 TAS plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0006836 IEA neurotransmitter transport
GO:0007268 TAS synaptic transmission
GO:0007269 TAS neurotransmitter secretion
GO:0015812 IEA gamma-aminobutyric acid transport
GO:0016021 IEA integral component of membrane
GO:0055085 TAS transmembrane transport
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000067567 SLC6A13 solute carrier family 6 (neurotransmitter transporter), member 13 protein_coding Danio_rerio
ENSMUSG00000030108 Slc6a13 solute carrier family 6 (neurotransmitter transporter, GABA), member 13 protein_coding Mus_musculus

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