C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 6 (neurotransmitter transporter, GABA), member 13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030108 Slc6a13 10090 + 6:121300227-121337733 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000064580 Slc6a13-001 121300227-121337733 protein_coding
  ENSMUST00000142021 Slc6a13-003 121300289-121333591 processed_transcript
  ENSMUST00000142144 Slc6a13-002 121300289-121303293 retained_intron
  ENSMUST00000142419 Slc6a13-004 121300782-121324330 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000064580ENSMUST00000142021ENSMUST00000142144ENSMUST00000142419
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000064580 11.754±8.86 1.059±0.21 0.277±0.22 5.060±2.88 1.561±0.30 0.284±0.04 0.130±0.08 44.430±6.97 69.865±51.25 0.353±0.13 0.229±0.11 0.884±0.41 9.788±9.24 0.340±0.20
ENSMUST00000142021 N/A N/A N/A 0.452±0.00 0.454±0.00 N/A N/A N/A N/A N/A N/A 0.475±0.23 N/A 0.008±0.00
ENSMUST00000142144 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.455±0.00 N/A N/A N/A
ENSMUST00000142419 N/A N/A N/A N/A N/A N/A 0.103±0.05 N/A N/A N/A N/A 0.560±0.08 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005332 IEA gamma-aminobutyric acid:sodium symporter activity
GO:0005887 IEA integral component of plasma membrane
GO:0006836 IEA neurotransmitter transport
GO:0015812 IEA gamma-aminobutyric acid transport
GO:0016021 IEA integral component of membrane
GO:0055085 IEA transmembrane transport
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000067567 SLC6A13 solute carrier family 6 (neurotransmitter transporter), member 13 protein_coding Danio_rerio
ENSG00000010379 SLC6A13 solute carrier family 6 (neurotransmitter transporter), member 13 protein_coding Homo_sapiens

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