C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tetratricopeptide repeat domain 19
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000011295 TTC19 9606 + 17:15999380-16045015 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261647 TTC19-001 15999380-16028912 protein_coding
  ENST00000465567 TTC19-006 16024618-16028786 retained_intron
  ENST00000466729 TTC19-012 15999784-16004251 nonsense_mediated_decay
  ENST00000470399 TTC19-008 15999834-16003853 nonsense_mediated_decay
  ENST00000470649 TTC19-010 16025088-16045015 protein_coding
  ENST00000475723 TTC19-002 15999802-16028786 nonsense_mediated_decay
  ENST00000481107 TTC19-005 16023673-16028786 retained_intron
  ENST00000497842 TTC19-009 15999824-16027535 processed_transcript
  ENST00000578103 TTC19-014 16025152-16027080 protein_coding
  ENST00000583704 TTC19-015 15999824-16000460 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261647ENST00000465567ENST00000475723ENST00000481107ENST00000497842
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261647 4.889±0.00 6.455±0.00 3.757±0.00 11.718±0.62 5.143±3.15 4.247±0.00 2.847±1.26 6.079±1.83 3.019±0.23 2.743±0.09 1.604±0.00 5.448±0.83 6.335±1.75 7.321±0.00
ENST00000465567 N/A 2.925±0.00 3.951±0.00 N/A N/A 5.335±0.00 0.955±0.00 2.720±0.00 2.916±0.00 2.540±0.00 N/A 3.943±1.08 N/A N/A
ENST00000475723 7.450±0.00 5.041±0.00 4.049±0.00 21.395±0.00 9.643±0.00 3.369±0.00 7.300±0.00 17.934±0.00 4.053±0.00 5.032±1.78 7.165±0.00 6.280±1.34 9.720±3.67 7.115±0.00
ENST00000481107 N/A 3.229±0.00 N/A 9.593±0.00 3.594±0.00 6.493±0.00 2.084±0.00 6.653±0.00 2.125±0.47 2.890±1.09 1.792±0.00 4.543±2.40 N/A 12.792±0.00
ENST00000497842 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.841±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002XH CIL_0002XH_0001 CGP 17:15944917-15999717
CIL_0000H6 CIL_0000H6_0001 CGP 17:15976560-16045015
CIL_0000NU CIL_0000NU_0001 CGP 17:15999380-16218185

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000910 TAS cytokinesis
GO:0005515 IPI:IEA protein binding
GO:0005739 IDA mitochondrion
GO:0005743 IDA mitochondrial inner membrane
GO:0005813 TAS centrosome
GO:0030496 TAS midbody
GO:0034551 IMP mitochondrial respiratory chain complex III assembly
GO:0042802 IEA identical protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074435 ttc19 tetratricopeptide repeat domain 19 protein_coding Danio_rerio
ENSMUSG00000042298 Ttc19 tetratricopeptide repeat domain 19 protein_coding Mus_musculus

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