C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: negative regulator of ubiquitin-like proteins 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000013374 NUB1 9606 + 7:151341699-151378449 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000413040 NUB1-001 151341699-151378449 protein_coding
  ENST00000460712 NUB1-014 151368733-151377281 protein_coding
  ENST00000468404 NUB1-003 151341804-151361249 nonsense_mediated_decay
  ENST00000470229 NUB1-007 151341812-151355815 protein_coding
  ENST00000470316 NUB1-005 151345345-151361237 nonsense_mediated_decay
  ENST00000477666 NUB1-011 151352252-151360244 processed_transcript
  ENST00000480714 NUB1-013 151368830-151374624 protein_coding
  ENST00000480907 NUB1-010 151351328-151368805 retained_intron
  ENST00000483358 NUB1-008 151345345-151360209 protein_coding
  ENST00000493588 NUB1-009 151351120-151360295 retained_intron
  ENST00000497987 NUB1-012 151360141-151369193 retained_intron
  ENST00000568733 NUB1-002 151341711-151378449 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000413040ENST00000468404ENST00000477666ENST00000480907ENST00000483358ENST00000568733
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000413040 9.129±0.00 5.818±0.00 1.371±0.00 5.303±2.67 5.893±3.12 8.904±7.54 5.061±3.82 8.014±4.72 2.448±1.01 17.392±0.00 8.403±7.11 12.731±0.75 11.029±2.49 13.762±1.89
ENST00000468404 7.213±0.00 6.807±0.00 N/A 3.943±0.00 4.484±1.49 1.435±0.00 2.717±1.78 4.324±0.00 1.804±0.63 7.429±4.70 2.019±1.34 4.667±1.11 7.775±1.96 5.264±0.00
ENST00000477666 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 32.607±0.00 22.025±0.00 35.650±0.00
ENST00000480907 N/A N/A 2.211±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 35.962±0.00
ENST00000483358 N/A N/A 2.500±0.00 6.060±1.09 N/A N/A N/A N/A 2.621±0.00 N/A N/A 29.464±0.00 21.368±0.00 41.277±29.96
ENST00000568733 5.325±0.00 N/A N/A N/A 2.411±0.00 N/A N/A N/A 1.895±0.00 N/A N/A 2.841±1.07 2.979±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RX CIL_0007RX_0001 VISTA 7:151109813-151711422
CIL_0004EL CIL_0004EL_0001 CGP 7:151238764-151378449
CIL_0004EK CIL_0004EK_0001 CGP 7:151341699-151410727

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006511 IMP ubiquitin-dependent protein catabolic process
GO:0016567 IMP protein ubiquitination
GO:0032436 IMP positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0034341 IEP response to interferon-gamma
GO:0034612 IEP response to tumor necrosis factor

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061417 nub1 negative regulator of ubiquitin-like proteins 1 protein_coding Danio_rerio
ENSMUSG00000028954 Nub1 negative regulator of ubiquitin-like proteins 1 protein_coding Mus_musculus

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