C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000013573 DDX11 9606 + 12:31073845-31104791 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000228264 DDX11-006 31073860-31104791 protein_coding
  ENST00000350437 DDX11-010 31073898-31104791 protein_coding
  ENST00000415475 DDX11-016 31073892-31089111 protein_coding
  ENST00000435753 DDX11-002 31073876-31104791 nonsense_mediated_decay
  ENST00000438391 DDX11-019 31073868-31089999 protein_coding
  ENST00000535158 DDX11-011 31073902-31089883 retained_intron
  ENST00000535317 DDX11-015 31074264-31084656 protein_coding
  ENST00000536265 DDX11-009 31073891-31104136 retained_intron
  ENST00000536580 DDX11-023 31091553-31096989 retained_intron
  ENST00000537136 DDX11-029 31102214-31103218 retained_intron
  ENST00000538345 DDX11-018 31083828-31103864 nonsense_mediated_decay
  ENST00000538740 DDX11-027 31100407-31101475 retained_intron
  ENST00000539049 DDX11-008 31073882-31104791 nonsense_mediated_decay
  ENST00000539673 DDX11-025 31092862-31100594 processed_transcript
  ENST00000539699 DDX11-026 31096635-31100847 retained_intron
  ENST00000539702 DDX11-030 31102268-31104269 protein_coding
  ENST00000540935 DDX11-007 31073879-31091771 nonsense_mediated_decay
  ENST00000542129 DDX11-005 31073860-31094633 nonsense_mediated_decay
  ENST00000542242 DDX11-021 31087576-31089681 retained_intron
  ENST00000542244 DDX11-013 31074220-31089618 nonsense_mediated_decay
  ENST00000542661 DDX11-028 31096914-31102729 retained_intron
  ENST00000542777 DDX11-032 31101513-31102261 retained_intron
  ENST00000542838 DDX11-001 31073845-31103943 protein_coding
  ENST00000543026 DDX11-014 31087645-31093720 retained_intron
  ENST00000543511 DDX11-024 31094295-31096873 retained_intron
  ENST00000543756 DDX11-017 31073909-31085068 nonsense_mediated_decay
  ENST00000544652 DDX11-020 31078520-31089130 protein_coding
  ENST00000545115 DDX11-031 31102268-31104005 nonsense_mediated_decay
  ENST00000545668 DDX11-003 31073894-31104791 protein_coding
  ENST00000545717 DDX11-022 31089069-31091273 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000228264ENST00000350437ENST00000415475ENST00000435753ENST00000438391ENST00000535158ENST00000535317ENST00000536265ENST00000538740ENST00000539049ENST00000539673ENST00000539702ENST00000542242ENST00000542244ENST00000543026ENST00000543756ENST00000545668
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000228264 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.143±0.00
ENST00000350437 N/A N/A N/A N/A N/A 0.812±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000415475 N/A 0.945±0.00 N/A N/A 3.185±0.00 N/A 0.665±0.00 N/A N/A N/A 2.674±0.00 0.782±0.00 N/A
ENST00000435753 N/A 0.165±0.00 N/A 0.381±0.00 N/A N/A N/A 0.233±0.00 N/A N/A 1.664±1.43 0.387±0.00 1.685±0.00
ENST00000438391 N/A N/A N/A 1.709±0.00 N/A N/A N/A 0.433±0.00 0.721±0.00 N/A N/A N/A N/A
ENST00000535158 N/A N/A N/A 1.032±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535317 N/A N/A 0.655±0.00 N/A N/A N/A N/A N/A N/A 0.475±0.00 N/A N/A N/A
ENST00000536265 N/A N/A N/A N/A N/A N/A N/A N/A 0.228±0.00 N/A N/A N/A N/A
ENST00000538740 N/A N/A N/A 3.273±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539049 N/A N/A 0.340±0.00 0.624±0.00 0.754±0.00 0.399±0.00 1.271±0.00 N/A N/A 0.568±0.00 4.054±0.00 0.712±0.02 1.734±0.51
ENST00000539673 N/A N/A 0.703±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539702 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.420±0.00 N/A N/A N/A
ENST00000542242 N/A 1.029±0.00 N/A N/A 5.370±0.00 0.148±0.00 N/A 1.712±0.00 N/A N/A 5.045±0.00 N/A N/A
ENST00000542244 N/A N/A N/A N/A N/A 0.292±0.00 N/A N/A 0.653±0.00 N/A N/A N/A N/A
ENST00000543026 0.428±0.00 0.431±0.00 0.475±0.00 N/A 0.579±0.00 0.092±0.00 N/A 0.441±0.00 N/A N/A N/A N/A N/A
ENST00000543756 N/A N/A N/A N/A N/A N/A N/A N/A 2.079±0.00 N/A N/A N/A N/A
ENST00000545668 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.545±0.00 N/A 1.969±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0000922 IDA spindle pole
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003690 IDA double-stranded DNA binding
GO:0003697 IDA single-stranded DNA binding
GO:0003723 IEA RNA binding
GO:0004003 IEA ATP-dependent DNA helicase activity
GO:0004386 IDA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0006139 IEA nucleobase-containing compound metabolic process
GO:0006200 IEA ATP catabolic process
GO:0006987 TAS activation of signaling protein activity involved in unfolded protein response
GO:0007062 IDA sister chromatid cohesion
GO:0008026 IEA ATP-dependent helicase activity
GO:0008094 IDA DNA-dependent ATPase activity
GO:0016032 IEA viral process
GO:0016818 IEA hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0030496 IDA midbody
GO:0030968 TAS endoplasmic reticulum unfolded protein response
GO:0032508 IEA DNA duplex unwinding
GO:0044267 TAS cellular protein metabolic process
GO:0046872 IEA metal ion binding
GO:0051539 IEA 4 iron, 4 sulfur cluster binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011072 ddx11 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 protein_coding Danio_rerio
ENSMUSG00000035842 Ddx11 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 protein_coding Mus_musculus

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