C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: patatin-like phospholipase domain containing 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000032444 PNPLA6 9606 + 19:7534004-7561764 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000221249 PNPLA6-001 7534004-7561764 protein_coding
  ENST00000414982 PNPLA6-002 7534750-7561761 protein_coding
  ENST00000450331 PNPLA6-004 7534750-7561764 protein_coding
  ENST00000545201 PNPLA6-003 7534242-7561761 protein_coding
  ENST00000593924 PNPLA6-008 7535025-7539974 protein_coding
  ENST00000594098 PNPLA6-006 7534191-7534834 retained_intron
  ENST00000594551 PNPLA6-015 7540038-7541632 protein_coding
  ENST00000594754 PNPLA6-007 7534152-7535582 retained_intron
  ENST00000594864 PNPLA6-020 7549701-7551030 processed_transcript
  ENST00000595176 PNPLA6-018 7541448-7550413 retained_intron
  ENST00000595264 PNPLA6-016 7539983-7542670 protein_coding
  ENST00000595352 PNPLA6-022 7556514-7557519 retained_intron
  ENST00000595889 PNPLA6-017 7542508-7550099 retained_intron
  ENST00000596515 PNPLA6-010 7534517-7536020 protein_coding
  ENST00000597202 PNPLA6-023 7560591-7561764 retained_intron
  ENST00000598462 PNPLA6-014 7536343-7540709 retained_intron
  ENST00000599311 PNPLA6-019 7541395-7550375 retained_intron
  ENST00000599947 PNPLA6-024 7558967-7561764 protein_coding
  ENST00000599951 PNPLA6-021 7550826-7554243 retained_intron
  ENST00000600737 PNPLA6-012 7535706-7561576 protein_coding
  ENST00000600942 PNPLA6-009 7534947-7540172 protein_coding
  ENST00000601001 PNPLA6-011 7534199-7540254 protein_coding
  ENST00000601668 PNPLA6-005 7534153-7540024 protein_coding
  ENST00000602191 PNPLA6-013 7535981-7540158 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000221249ENST00000414982ENST00000593924ENST00000595264ENST00000597202ENST00000600737ENST00000600942
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000221249 N/A 4.582±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000414982 N/A N/A N/A N/A 3.072±0.00 N/A N/A N/A N/A N/A N/A N/A 3.457±0.00 N/A
ENST00000593924 N/A N/A N/A N/A N/A N/A N/A 3.639±0.00 N/A N/A 4.267±0.00 N/A N/A N/A
ENST00000595264 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.024±0.00 N/A N/A N/A
ENST00000597202 N/A N/A N/A N/A N/A 2.912±0.00 1.459±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000600737 12.142±0.00 15.517±0.00 1.285±0.00 14.473±9.82 6.923±5.98 6.744±5.76 4.335±3.64 21.313±0.00 8.323±0.00 9.869±6.15 23.133±0.00 9.578±9.26 10.973±4.07 25.862±0.00
ENST00000600942 N/A N/A 4.163±0.00 N/A N/A N/A N/A N/A 4.292±0.00 N/A N/A 3.110±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00043C CIL_00043C_0001 CGP 19:7515292-7534009

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0004622 IEA lysophospholipase activity
GO:0005783 IEA endoplasmic reticulum
GO:0006629 IEA lipid metabolic process
GO:0008152 IEA metabolic process
GO:0008219 IEA cell death
GO:0009887 IEA organ morphogenesis
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016042 IEA lipid catabolic process
GO:0046470 IEA phosphatidylcholine metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010773 pnpla6 patatin-like phospholipase domain containing 6 protein_coding Danio_rerio
ENSMUSG00000004565 Pnpla6 patatin-like phospholipase domain containing 6 protein_coding Mus_musculus

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