C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: EF-hand calcium binding domain 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000034239 EFCAB1 9606 - 8:48710789-48735311 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262103 EFCAB1-001 48723408-48735232 protein_coding
  ENST00000433756 EFCAB1-201 48714915-48735311 protein_coding
  ENST00000519425 EFCAB1-004 48724737-48730125 retained_intron
  ENST00000521002 EFCAB1-002 48710789-48735234 processed_transcript
  ENST00000521701 EFCAB1-007 48716224-48735301 nonsense_mediated_decay
  ENST00000521721 EFCAB1-009 48729764-48735311 processed_transcript
  ENST00000522254 EFCAB1-006 48724410-48730610 protein_coding
  ENST00000523008 EFCAB1-010 48713634-48729789 protein_coding
  ENST00000523092 EFCAB1-008 48724691-48735268 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262103ENST00000433756ENST00000519425ENST00000521002ENST00000521701ENST00000521721ENST00000522254ENST00000523092
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262103 0.138±0.00 0.099±0.00 0.084±0.00 0.092±0.00 N/A 0.010±0.00 0.084±0.07 1.873±1.24 N/A 1.275±1.50 0.070±0.03 3.202±0.58
ENST00000433756 0.026±0.00 0.515±0.00 0.179±0.00 0.063±0.05 N/A N/A 0.015±0.00 N/A N/A 0.909±0.89 0.036±0.00 N/A
ENST00000519425 N/A 0.345±0.00 N/A N/A N/A N/A N/A N/A N/A 0.870±0.00 N/A N/A
ENST00000521002 N/A N/A 0.071±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521701 0.077±0.00 N/A N/A N/A 0.033±0.00 N/A 0.131±0.00 N/A 0.048±0.00 N/A N/A 5.271±0.00
ENST00000521721 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.180±0.00 N/A
ENST00000522254 N/A N/A N/A 0.052±0.00 N/A N/A 0.109±0.00 1.344±0.00 N/A N/A 0.043±0.00 N/A
ENST00000523092 N/A 0.452±0.00 N/A 0.129±0.00 0.192±0.00 N/A 0.905±0.00 N/A N/A N/A 0.179±0.01 10.878±2.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008K9 CIL_0008K9_0001 VISTA 8:48128034-48729628
CIL_000861 CIL_000861_0001 VISTA 8:48255663-48856793
CIL_0008T2 CIL_0008T2_0001 VISTA 8:48279548-48880849
CIL_000923 CIL_000923_0001 VISTA 8:48281590-48883174

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061377 efcab1 EF-hand calcium binding domain 1 protein_coding Danio_rerio
ENSMUSG00000068617 Efcab1 EF hand calcium binding domain 1 protein_coding Mus_musculus

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