C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SRY (sex determining region Y)-box 30
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000039600 SOX30 9606 - 5:157625679-157671480 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000265007 SOX30-001 157625679-157652420 protein_coding
  ENST00000311371 SOX30-002 157625679-157652364 protein_coding
  ENST00000519442 SOX30-004 157626175-157671480 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000265007ENST00000311371ENST00000519442
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000265007 N/A 0.099±0.00 0.029±0.00 N/A N/A 0.035±0.00 0.044±0.00 N/A N/A 0.106±0.08 0.094±0.03 22.310±11.03
ENST00000311371 0.005±0.00 N/A 0.072±0.00 N/A 0.041±0.00 N/A N/A N/A 0.010±0.00 0.040±0.00 N/A N/A
ENST00000519442 0.009±0.00 0.050±0.00 0.008±0.00 0.035±0.00 N/A 0.014±0.00 0.029±0.00 0.031±0.00 N/A 0.075±0.00 0.097±0.02 16.034±8.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094M CIL_00094M_0001 VISTA 5:157087063-157688799

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000981 IDA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0007283 IEA spermatogenesis
GO:0031960 IEP response to corticosteroid
GO:0043565 IDA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000040489 Sox30 SRY (sex determining region Y)-box 30 protein_coding Mus_musculus

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