C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRY (sex determining region Y)-box 30
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000311371 SOX30-002 ENSG00000039600 9606 - 5:157625679-157652364 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonLungOvaryENST00000311371
Transcript ID Adipose Brain Colon Lung Ovary
ENST00000311371 0.005±0.00 0.072±0.00 0.041±0.00 0.010±0.00 0.040±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094M CIL_00094M_0001 VISTA 5:157087063-157688799

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000981 IDA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0031960 IEP response to corticosteroid
GO:0043565 IDA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000049038 Sox30-001 protein_coding Mus_musculus 0 1184

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