C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: retinol saturase (all-trans-retinol 13,14-reductase)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000042445 RETSAT 9606 - 2:85342088-85354620 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000295802 RETSAT-001 85342088-85354620 protein_coding
  ENST00000409984 RETSAT-007 85349432-85354506 protein_coding
  ENST00000429806 RETSAT-002 85342088-85350891 nonsense_mediated_decay
  ENST00000438611 RETSAT-003 85342971-85349481 nonsense_mediated_decay
  ENST00000449375 RETSAT-004 85342682-85354500 protein_coding
  ENST00000482694 RETSAT-006 85349878-85351016 processed_transcript
  ENST00000490291 RETSAT-005 85351399-85354531 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000295802ENST00000429806
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000295802 42.856±0.00 5.723±0.00 8.708±0.00 8.850±5.12 105.645±102.04 14.186±2.66 5.914±4.19 12.368±7.57 18.954±7.56 8.911±6.11 29.164±25.67 10.765±5.13 9.519±3.68 11.834±2.80
ENST00000429806 16.561±0.00 3.785±0.00 N/A 7.621±0.00 79.262±0.00 7.197±0.00 4.738±0.00 20.845±0.00 23.030±0.00 N/A N/A 10.721±3.38 8.302±4.70 13.956±7.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AX CIL_0009AX_0001 VISTA 2:84977509-85579132

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005640 ISS nuclear outer membrane
GO:0005789 IBA endoplasmic reticulum membrane
GO:0016020 IDA membrane
GO:0016491 ISS:IEA oxidoreductase activity
GO:0031965 ISS nuclear membrane
GO:0042572 IBA retinol metabolic process
GO:0051786 IBA all-trans-retinol 13,14-reductase activity
GO:0055114 ISS:IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018600 retsat retinol saturase (all-trans-retinol 13,14-reductase) protein_coding Danio_rerio
ENSDARG00000070140 RETSAT (2 of 2) retinol saturase (all-trans-retinol 13,14-reductase) protein_coding Danio_rerio
ENSMUSG00000056666 Retsat retinol saturase (all trans retinol 13,14 reductase) protein_coding Mus_musculus

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