C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tumor necrosis factor receptor superfamily, member 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000049249 TNFRSF9 9606 - 1:7915894-7943165 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000377507 TNFRSF9-001 7919847-7940866 protein_coding
  ENST00000474475 TNFRSF9-003 7921800-7935100 protein_coding
  ENST00000492571 TNFRSF9-002 7933127-7938304 nonsense_mediated_decay
  ENST00000615230 TNFRSF9-201 7915894-7943165 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000377507ENST00000474475ENST00000615230
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000377507 N/A N/A 0.222±0.00 N/A 0.039±0.00 0.057±0.00 0.011±0.00 N/A N/A 0.241±0.07 N/A 0.203±0.09 0.150±0.00 N/A
ENST00000474475 N/A N/A N/A N/A 0.897±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615230 0.064±0.00 1.944±0.00 N/A 0.101±0.00 0.083±0.03 0.083±0.00 0.072±0.00 0.146±0.03 0.052±0.01 0.273±0.00 0.010±0.00 0.065±0.03 0.017±0.01 0.097±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VW CIL_0007VW_0001 VISTA 1:7770379-8371827

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004872 TAS receptor activity
GO:0005515 IEA protein binding
GO:0005615 IEA extracellular space
GO:0005887 TAS integral component of plasma membrane
GO:0006915 TAS apoptotic process
GO:0008285 TAS negative regulation of cell proliferation
GO:0009897 IEA external side of plasma membrane
GO:0019955 IEA cytokine binding
GO:0042127 IEA regulation of cell proliferation
GO:0070207 IEA protein homotrimerization
GO:2001180 IEA negative regulation of interleukin-10 secretion
GO:2001183 IEA negative regulation of interleukin-12 secretion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060498 tnfrsf9a tumor necrosis factor receptor superfamily, member 9a protein_coding Danio_rerio
ENSDARG00000090728 TNFRSF9 (2 of 2) tumor necrosis factor receptor superfamily, member 9 protein_coding Danio_rerio
ENSMUSG00000028965 Tnfrsf9 tumor necrosis factor receptor superfamily, member 9 protein_coding Mus_musculus

Loading