C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tumor necrosis factor receptor superfamily, member 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028965 Tnfrsf9 10090 + 4:150914562-150946102 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030808 Tnfrsf9-001 150920190-150946102 protein_coding
  ENSMUST00000060901 Tnfrsf9-003 150929676-150945067 protein_coding
  ENSMUST00000105671 Tnfrsf9-002 150925306-150945232 protein_coding
  ENSMUST00000105672 Tnfrsf9-201 150920155-150946102 protein_coding
  ENSMUST00000116257 Tnfrsf9-202 150927999-150946102 protein_coding
  ENSMUST00000126707 Tnfrsf9-005 150929797-150935556 protein_coding
  ENSMUST00000135169 Tnfrsf9-006 150914562-150934411 protein_coding
  ENSMUST00000139826 Tnfrsf9-004 150927918-150934402 protein_coding
  ENSMUST00000146133 Tnfrsf9-007 150927999-150929948 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030808ENSMUST00000060901ENSMUST00000105671ENSMUST00000105672ENSMUST00000116257ENSMUST00000126707ENSMUST00000135169ENSMUST00000139826
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030808 0.081±0.00 N/A 0.053±0.00 N/A N/A N/A N/A N/A 0.025±0.01 N/A N/A N/A 61.433±33.22 N/A
ENSMUST00000060901 N/A N/A 0.091±0.00 N/A N/A 0.126±0.03 0.021±0.00 0.144±0.06 N/A N/A N/A 1.644±0.24 134.965±28.49 0.849±0.00
ENSMUST00000105671 0.166±0.00 0.098±0.03 N/A N/A 0.260±0.00 0.282±0.00 0.013±0.00 0.069±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000105672 0.240±0.01 N/A 0.209±0.00 0.064±0.03 0.655±0.00 0.106±0.00 0.043±0.03 0.056±0.00 0.043±0.02 0.310±0.00 0.024±0.00 1.477±1.66 117.062±54.46 0.454±0.00
ENSMUST00000116257 0.313±0.06 N/A 0.058±0.01 N/A 0.903±0.44 0.130±0.07 N/A 0.248±0.00 0.065±0.04 0.238±0.02 0.110±0.00 1.034±1.07 N/A 0.480±0.00
ENSMUST00000126707 0.372±0.03 0.075±0.04 N/A 0.086±0.01 0.580±0.00 0.336±0.00 N/A 0.114±0.04 0.050±0.02 N/A N/A 1.906±1.04 N/A N/A
ENSMUST00000135169 N/A N/A N/A 0.063±0.00 N/A N/A N/A 0.031±0.00 0.123±0.01 N/A N/A 3.821±0.00 313.643±6.27 N/A
ENSMUST00000139826 0.422±0.19 N/A 0.316±0.00 N/A 1.030±0.25 0.177±0.09 N/A 0.153±0.00 0.231±0.00 0.284±0.08 N/A 4.435±1.02 N/A 0.764±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VW CIL_0007VW_0002 VISTA 4:150524120-151125978

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004872 IPI receptor activity
GO:0005615 IDA extracellular space
GO:0009897 IDA external side of plasma membrane
GO:0016021 IEA integral component of membrane
GO:0019955 IPI cytokine binding
GO:0042127 IDA regulation of cell proliferation
GO:0070207 IDA protein homotrimerization
GO:2001180 IMP negative regulation of interleukin-10 secretion
GO:2001183 IMP negative regulation of interleukin-12 secretion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060498 tnfrsf9a tumor necrosis factor receptor superfamily, member 9a protein_coding Danio_rerio
ENSDARG00000090728 TNFRSF9 (2 of 2) tumor necrosis factor receptor superfamily, member 9 protein_coding Danio_rerio
ENSG00000049249 TNFRSF9 tumor necrosis factor receptor superfamily, member 9 protein_coding Homo_sapiens

Loading