C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal RNA processing 12 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000052749 RRP12 9606 - 10:97356358-97426076 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000315563 RRP12-008 97356702-97401283 protein_coding
  ENST00000370992 RRP12-201 97356702-97401370 protein_coding
  ENST00000414986 RRP12-202 97356702-97401370 protein_coding
  ENST00000439965 RRP12-014 97400481-97426076 protein_coding
  ENST00000465394 RRP12-005 97357106-97363867 retained_intron
  ENST00000479317 RRP12-003 97387997-97388516 retained_intron
  ENST00000479481 RRP12-001 97356701-97373593 processed_transcript
  ENST00000487612 RRP12-006 97365890-97366560 protein_coding
  ENST00000490815 RRP12-004 97373061-97380837 processed_transcript
  ENST00000491313 RRP12-002 97356358-97367376 retained_intron
  ENST00000536831 RRP12-007 97356701-97426074 protein_coding
  ENST00000618765 RRP12-011 97393684-97401534 protein_coding
  ENST00000619048 RRP12-012 97423888-97426074 processed_transcript
  ENST00000621606 RRP12-010 97418793-97426046 processed_transcript
  ENST00000622320 RRP12-013 97401134-97426074 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000315563ENST00000370992ENST00000414986ENST00000479317ENST00000479481ENST00000491313ENST00000536831ENST00000621606
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000315563 N/A 2.292±0.00 0.763±0.00 3.038±0.00 2.149±0.00 1.007±0.00 0.927±0.00 N/A 1.046±0.00 1.516±0.00 11.606±0.00 3.531±2.14 1.659±0.32 3.543±1.28
ENST00000370992 3.967±0.00 4.184±0.00 N/A 2.011±0.98 1.589±0.84 1.019±0.56 2.395±1.47 4.747±0.00 0.491±0.24 2.840±2.51 10.536±9.67 5.029±2.68 2.869±0.82 4.127±1.84
ENST00000414986 N/A N/A N/A 0.986±0.00 N/A N/A N/A 0.718±0.00 N/A N/A N/A N/A N/A N/A
ENST00000479317 N/A N/A N/A N/A N/A 2.176±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479481 N/A N/A N/A 1.213±0.00 N/A N/A N/A N/A 0.618±0.00 N/A 0.305±0.00 1.403±0.00 N/A 1.579±0.00
ENST00000491313 N/A 3.297±0.00 N/A 2.416±0.00 1.684±0.00 N/A N/A 2.079±1.80 2.202±0.00 N/A N/A 3.042±0.81 N/A 6.795±0.00
ENST00000536831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.677±0.00 N/A 3.788±0.00
ENST00000621606 N/A N/A 0.565±0.00 N/A N/A N/A N/A N/A N/A 0.506±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004I4 CIL_0004I4_0001 CGP 10:97332497-97426076

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005488 IEA binding
GO:0005730 IDA nucleolus
GO:0016021 IEA integral component of membrane
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000022410 rrp12 ribosomal RNA processing 12 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000035049 Rrp12 ribosomal RNA processing 12 homolog (S. cerevisiae) protein_coding Mus_musculus

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