C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004I4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000181274-ENSG00000052749 CGP 9606 10:97332497-97426076
GeneTranscriptPositionBiotype
ENSG00000052749 (RRP12)
ribosomal RNA processing 12 homolog (S. cerevisiae) 		ENST00000315563 (RRP12-008) 97356702-97401283 protein_coding
ENST00000370992 (RRP12-201) 97356702-97401370 protein_coding
ENST00000414986 (RRP12-202) 97356702-97401370 protein_coding
ENST00000439965 (RRP12-014) 97400481-97426076 protein_coding
ENST00000465394 (RRP12-005) 97357106-97363867 retained_intron
ENST00000479317 (RRP12-003) 97387997-97388516 retained_intron
ENST00000479481 (RRP12-001) 97356701-97373593 processed_transcript
ENST00000487612 (RRP12-006) 97365890-97366560 protein_coding
ENST00000490815 (RRP12-004) 97373061-97380837 processed_transcript
ENST00000491313 (RRP12-002) 97356358-97367376 retained_intron
ENST00000536831 (RRP12-007) 97356701-97426074 protein_coding
ENST00000618765 (RRP12-011) 97393684-97401534 protein_coding
ENST00000619048 (RRP12-012) 97423888-97426074 processed_transcript
ENST00000621606 (RRP12-010) 97418793-97426046 processed_transcript
ENST00000622320 (RRP12-013) 97401134-97426074 protein_coding
ENSG00000181274 (FRAT2)
frequently rearranged in advanced T-cell lymphomas 2 		ENST00000371019 (FRAT2-001) 97332497-97334709 protein_coding
ENSG00000200737 (Y_RNA)
Y RNA 		ENST00000363867 (Y_RNA.1-380) 97421195-97421307 misc_RNA
ENSG00000225850 (RP11-452K12.4)
 ENST00000445808 (RP11-452K12.4-001) 97334564-97343203 antisense
ENSG00000231508 (RP11-452K12.6)
 ENST00000442771 (RP11-452K12.6-001) 97393197-97393547 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0004I4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000047604-ENSMUSG00000035049 CGP 10090 19:41845978-41896153
GeneTranscriptPositionBiotype
ENSMUSG00000035049 (Rrp12)
ribosomal RNA processing 12 homolog (S. cerevisiae) 		ENSMUST00000038677 (Rrp12-201) 41862852-41896153 protein_coding
ENSMUSG00000047604 (Frat2)
frequently rearranged in advanced T cell lymphomas 2 		ENSMUST00000059231 (Frat2-201) 41845978-41848132 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004I4_0001ENSG00000052749ENST00000315563ENST00000370992ENST00000414986ENST00000439965ENST00000465394ENST00000479317ENST00000479481ENST00000487612ENST00000490815ENST00000491313ENST00000536831ENST00000618765ENST00000619048ENST00000621606ENST00000622320ENSG00000181274ENST00000371019ENSG00000200737ENST00000363867ENSG00000225850ENST00000445808ENSG00000231508ENST00000442771CIL_0004I4_0002ENSMUSG00000035049ENSMUST00000038677ENSMUSG00000047604ENSMUST00000059231
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004I4_0001ENSG00000052749ENST00000315563ENST00000370992ENST00000414986ENST00000479317ENST00000479481ENST00000491313ENST00000536831ENST00000621606ENSG00000181274ENST00000371019ENSG00000200737ENST00000363867ENSG00000225850ENST00000445808ENSG00000231508ENST00000442771CIL_0004I4_0002ENSMUSG00000035049ENSMUST00000038677ENSMUSG00000047604ENSMUST00000059231
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000052749 ENST00000315563 N/A 2.292±0.00 0.763±0.00 3.038±0.00 2.149±0.00 1.007±0.00 0.927±0.00 N/A 1.046±0.00 1.516±0.00 11.606±0.00 3.531±2.14 1.659±0.32 3.543±1.28
ENST00000370992 3.967±0.00 4.184±0.00 N/A 2.011±0.98 1.589±0.84 1.019±0.56 2.395±1.47 4.747±0.00 0.491±0.24 2.840±2.51 10.536±9.67 5.029±2.68 2.869±0.82 4.127±1.84
ENST00000414986 N/A N/A N/A 0.986±0.00 N/A N/A N/A 0.718±0.00 N/A N/A N/A N/A N/A N/A
ENST00000439965 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465394 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479317 N/A N/A N/A N/A N/A 2.176±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479481 N/A N/A N/A 1.213±0.00 N/A N/A N/A N/A 0.618±0.00 N/A 0.305±0.00 1.403±0.00 N/A 1.579±0.00
ENST00000487612 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490815 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491313 N/A 3.297±0.00 N/A 2.416±0.00 1.684±0.00 N/A N/A 2.079±1.80 2.202±0.00 N/A N/A 3.042±0.81 N/A 6.795±0.00
ENST00000536831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.677±0.00 N/A 3.788±0.00
ENST00000618765 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619048 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621606 N/A N/A 0.565±0.00 N/A N/A N/A N/A N/A N/A 0.506±0.00 N/A N/A N/A N/A
ENST00000622320 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000181274 ENST00000371019 4.420±0.00 4.932±0.00 0.565±0.00 4.603±0.00 2.473±0.00 4.009±0.00 1.875±1.33 2.963±0.00 1.753±0.00 1.798±0.00 0.852±0.00 10.428±8.57 N/A 10.028±1.29
ENSG00000200737 ENST00000363867 N/A N/A N/A N/A 0.854±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000225850 ENST00000445808 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.367±1.08
ENSG00000231508 ENST00000442771 N/A 0.040±0.00 0.300±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.120±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000035049 ENSMUST00000038677 2.051±0.36 2.495±1.41 2.127±0.23 5.091±1.10 1.577±1.15 1.070±0.88 1.324±0.20 1.127±0.64 3.039±2.33 1.104±0.46 5.721±1.30 2.318±1.45 8.875±5.49 12.908±3.40
ENSMUSG00000047604 ENSMUST00000059231 1.718±0.00 N/A 1.084±0.23 5.465±2.09 2.083±0.54 21.963±2.08 0.687±0.19 0.605±0.15 3.669±2.56 1.831±0.18 4.841±0.46 5.803±1.07 1.554±0.37 27.988±10.65

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