C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: trafficking protein particle complex 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000054116 TRAPPC3 9606 - 1:36136570-36156053 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000373159 TRAPPC3-003 36137896-36149496 protein_coding
  ENST00000373162 TRAPPC3-004 36137054-36149497 protein_coding
  ENST00000373163 TRAPPC3-005 36136945-36149451 protein_coding
  ENST00000373166 TRAPPC3-001 36136572-36149469 protein_coding
  ENST00000462715 TRAPPC3-002 36136581-36140998 processed_transcript
  ENST00000469757 TRAPPC3-007 36137262-36149496 processed_transcript
  ENST00000497251 TRAPPC3-006 36139399-36149287 processed_transcript
  ENST00000616074 TRAPPC3-201 36136570-36149514 protein_coding
  ENST00000616395 TRAPPC3-202 36136570-36149514 protein_coding
  ENST00000617904 TRAPPC3-203 36136570-36156053 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000373162ENST00000373163ENST00000373166ENST00000616074ENST00000616395
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000373162 N/A N/A N/A 5.884±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000373163 N/A N/A N/A N/A N/A 23.165±0.00 N/A N/A N/A N/A 31.673±0.00
ENST00000373166 N/A 11.056±0.00 N/A 21.558±0.00 16.810±11.10 8.672±4.41 14.755±2.18 N/A 33.922±7.27 49.962±11.84 41.138±22.03
ENST00000616074 8.403±0.00 N/A N/A N/A N/A N/A 11.995±0.00 N/A N/A N/A N/A
ENST00000616395 N/A 7.335±0.00 6.772±0.00 9.088±0.00 N/A 1.364±0.00 N/A 9.927±0.00 10.832±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004JJ CIL_0004JJ_0002 CGP 1:36095236-36156053

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 IEA Golgi membrane
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005829 IEA cytosol
GO:0006888 IEA ER to Golgi vesicle-mediated transport
GO:0030008 IEA TRAPP complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045364 trappc3 trafficking protein particle complex 3 protein_coding Danio_rerio
ENSMUSG00000028847 Trappc3 trafficking protein particle complex 3 protein_coding Mus_musculus

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