C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: mitochondrial ribosomal protein L43
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000055950 MRPL43 9606 - 10:100969458-100987515 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000299179 MRPL43-007 100981376-100987494 protein_coding
  ENST00000318325 MRPL43-002 100977821-100987497 protein_coding
  ENST00000318364 MRPL43-004 100986276-100987515 protein_coding
  ENST00000342071 MRPL43-201 100981377-100987515 protein_coding
  ENST00000370234 MRPL43-001 100986280-100987483 protein_coding
  ENST00000370236 MRPL43-012 100986274-100987483 protein_coding
  ENST00000370241 MRPL43-008 100978729-100987456 protein_coding
  ENST00000370242 MRPL43-006 100979198-100987497 protein_coding
  ENST00000448244 MRPL43-009 100981376-100987433 protein_coding
  ENST00000476012 MRPL43-003 100981376-100987270 processed_transcript
  ENST00000477279 MRPL43-010 100986276-100987515 protein_coding
  ENST00000487059 MRPL43-011 100986588-100987513 retained_intron
  ENST00000493646 MRPL43-005 100986276-100987286 processed_transcript
  ENST00000523148 MRPL43-013 100969458-100987196 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000299179ENST00000318364ENST00000370234ENST00000370236ENST00000448244ENST00000476012ENST00000477279ENST00000493646
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000299179 14.403±0.00 N/A N/A 5.537±0.00 23.768±0.00 N/A N/A N/A 4.716±0.00 2.472±0.00 22.754±0.00 N/A N/A N/A
ENST00000318364 N/A N/A N/A 3.471±0.00 5.026±0.00 8.093±0.00 7.594±5.72 15.923±0.00 7.531±0.00 14.971±0.00 24.249±0.00 39.449±0.00 33.902±17.16 N/A
ENST00000370234 N/A 19.199±0.00 N/A 3.787±0.00 15.301±0.00 16.027±0.00 9.446±0.00 16.380±5.14 N/A 20.467±0.00 13.171±0.00 N/A N/A N/A
ENST00000370236 10.495±0.00 N/A N/A 15.768±0.00 N/A 16.636±0.00 1.074±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000448244 N/A N/A 7.777±0.00 N/A 8.689±0.00 N/A 1.227±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000476012 N/A N/A N/A N/A N/A N/A N/A 23.273±0.00 N/A N/A N/A N/A N/A N/A
ENST00000477279 N/A N/A 2.057±0.00 6.303±0.00 N/A N/A N/A N/A N/A 2.203±0.00 N/A N/A N/A N/A
ENST00000493646 15.822±0.00 20.574±0.00 N/A 21.883±0.00 13.898±0.00 24.122±0.00 N/A 16.433±0.00 N/A N/A N/A 47.460±0.00 N/A 31.606±0.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BC CIL_0008BC_0001 VISTA 10:100387324-100989228
CIL_0008BD CIL_0008BD_0001 VISTA 10:100486833-101088338
CIL_0007U1 CIL_0007U1_0001 VISTA 10:100491715-101092615
CIL_000940 CIL_000940_0001 VISTA 10:100919065-101519843
CIL_0001CA CIL_0001CA_0002 CGP 10:100969458-100987515

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003735 NAS structural constituent of ribosome
GO:0005739 IEA mitochondrion
GO:0005761 NAS mitochondrial ribosome
GO:0006412 NAS translation
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076334 mrpl43 mitochondrial ribosomal protein L43 protein_coding Danio_rerio
ENSMUSG00000025208 Mrpl43 mitochondrial ribosomal protein L43 protein_coding Mus_musculus

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