C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ciliary rootlet coiled-coil, rootletin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000058453 CROCC 9606 + 1:16740273-16972979 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000375541 CROCC-001 16921950-16972979 protein_coding
  ENST00000445545 CROCC-002 16922755-16961078 protein_coding
  ENST00000465021 CROCC-014 16966028-16970742 processed_transcript
  ENST00000465291 CROCC-015 16969785-16970967 processed_transcript
  ENST00000466256 CROCC-003 16740273-16941434 processed_transcript
  ENST00000467715 CROCC-009 16936791-16940093 protein_coding
  ENST00000467938 CROCC-004 16922767-16954362 protein_coding
  ENST00000477773 CROCC-013 16948391-16951338 processed_transcript
  ENST00000486318 CROCC-011 16944125-16951955 processed_transcript
  ENST00000492631 CROCC-005 16930135-16946405 processed_transcript
  ENST00000494191 CROCC-006 16938909-16954357 retained_intron
  ENST00000497654 CROCC-016 16953157-16954781 retained_intron
  ENST00000498688 CROCC-012 16946867-16953215 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000375541ENST00000445545ENST00000465021ENST00000465291ENST00000477773ENST00000486318ENST00000497654
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000375541 0.740±0.00 N/A N/A 0.426±0.00 N/A N/A 1.215±0.00 1.608±0.00 0.365±0.00 0.946±0.00 10.713±8.24 1.401±0.83 1.696±0.34
ENST00000445545 N/A 1.548±0.00 0.261±0.00 N/A N/A 0.187±0.00 0.063±0.00 N/A 0.924±0.00 0.553±0.07 N/A N/A N/A
ENST00000465021 N/A 8.274±0.00 N/A 3.598±0.00 N/A N/A 0.453±0.00 3.151±2.29 N/A N/A 19.981±0.00 N/A 7.971±0.87
ENST00000465291 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.174±0.00 N/A
ENST00000477773 N/A 6.753±0.00 N/A N/A N/A N/A N/A N/A 1.299±0.00 N/A N/A N/A N/A
ENST00000486318 N/A N/A N/A 0.781±0.00 N/A N/A N/A 1.117±0.00 N/A N/A N/A N/A N/A
ENST00000497654 N/A N/A N/A N/A 1.682±0.00 0.957±0.00 N/A N/A 2.250±0.77 N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 ISS structural molecule activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005813 IDA centrosome
GO:0005814 ISS centriole
GO:0005886 IDA plasma membrane
GO:0007049 IEA cell cycle
GO:0008104 IMP protein localization
GO:0010457 IMP centriole-centriole cohesion
GO:0015629 IDA actin cytoskeleton
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0019894 ISS kinesin binding
GO:0030030 IEA cell projection organization
GO:0033365 IMP protein localization to organelle
GO:0035253 ISS ciliary rootlet
GO:0051297 IDA centrosome organization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090150 CABZ01072698.1 ciliary rootlet coiled-coil, rootletin protein_coding Danio_rerio
ENSMUSG00000040860 Crocc ciliary rootlet coiled-coil, rootletin protein_coding Mus_musculus

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