C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ciliary rootlet coiled-coil, rootletin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040860 Crocc 10090 - 4:141016637-141060550 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000040222 Crocc-201 141016640-141053661 protein_coding
  ENSMUST00000097816 Crocc-001 141016637-141060550 protein_coding
  ENSMUST00000102491 Crocc-002 141016637-141053722 protein_coding
  ENSMUST00000122846 Crocc-006 141016637-141022124 retained_intron
  ENSMUST00000124286 Crocc-005 141019725-141022516 retained_intron
  ENSMUST00000126863 Crocc-003 141045802-141058109 retained_intron
  ENSMUST00000126973 Crocc-007 141016979-141018800 retained_intron
  ENSMUST00000137721 Crocc-004 141021538-141022546 retained_intron
  ENSMUST00000144196 Crocc-010 141047043-141060545 protein_coding
  ENSMUST00000151455 Crocc-009 141016637-141029175 retained_intron
  ENSMUST00000168157 Crocc-202 141016640-141058199 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040222ENSMUST00000097816ENSMUST00000102491ENSMUST00000122846ENSMUST00000151455ENSMUST00000168157
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040222 N/A N/A N/A 3.496±0.00 0.039±0.00 N/A 0.239±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000097816 N/A N/A 1.761±0.27 2.546±0.31 N/A N/A N/A N/A 0.353±0.21 0.646±0.01 0.293±0.00 N/A 1.269±0.82 0.993±0.12
ENSMUST00000102491 1.488±0.73 0.752±0.26 3.615±0.42 5.175±2.48 N/A 1.014±0.40 0.425±0.00 5.880±1.11 0.350±0.01 1.242±0.46 0.131±0.00 8.845±1.87 1.121±0.42 1.096±0.46
ENSMUST00000122846 1.294±0.77 1.170±0.33 4.947±0.89 5.616±0.18 1.129±0.49 1.562±0.00 0.744±0.03 5.910±1.76 0.335±0.14 1.459±0.34 0.414±0.15 7.063±0.67 1.292±0.00 2.583±0.44
ENSMUST00000151455 N/A N/A N/A N/A N/A N/A N/A N/A 0.187±0.00 N/A N/A N/A N/A N/A
ENSMUST00000168157 0.475±0.22 0.607±0.05 N/A N/A 0.842±0.76 1.250±0.00 N/A 1.156±0.00 N/A 0.833±0.14 N/A 1.812±0.14 1.132±0.25 0.726±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WS CIL_0003WS_0002 CGP 4:141010418-141060550

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 IDA structural molecule activity
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005813 IEA centrosome
GO:0005814 IDA centriole
GO:0005886 IEA plasma membrane
GO:0007049 IEA cell cycle
GO:0008104 IEA protein localization
GO:0010457 IEA centriole-centriole cohesion
GO:0015629 IEA actin cytoskeleton
GO:0019894 IPI kinesin binding
GO:0030030 IEA cell projection organization
GO:0033365 IEA protein localization to organelle
GO:0035253 IDA ciliary rootlet
GO:0051297 ISS centrosome organization
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090150 CABZ01072698.1 ciliary rootlet coiled-coil, rootletin protein_coding Danio_rerio
ENSG00000058453 CROCC ciliary rootlet coiled-coil, rootletin protein_coding Homo_sapiens

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