C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pleckstrin and Sec7 domain containing
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000059915 PSD 9606 - 10:102402617-102421539 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000020673 PSD-004 102402619-102419144 protein_coding
  ENST00000406432 PSD-201 102402617-102419934 protein_coding
  ENST00000461698 PSD-011 102405348-102409290 processed_transcript
  ENST00000472685 PSD-006 102416654-102419718 processed_transcript
  ENST00000473507 PSD-008 102404936-102406134 processed_transcript
  ENST00000479172 PSD-010 102404645-102405462 processed_transcript
  ENST00000488194 PSD-009 102405361-102411756 processed_transcript
  ENST00000492902 PSD-007 102416710-102421539 processed_transcript
  ENST00000611678 PSD-202 102402617-102419727 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonLungOvaryTestisENST00000020673ENST00000406432ENST00000473507ENST00000492902ENST00000611678
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Lung Ovary Testis
ENST00000020673 N/A N/A N/A 1.855±0.00 N/A N/A N/A N/A N/A
ENST00000406432 N/A N/A N/A 3.166±0.00 N/A N/A N/A N/A N/A
ENST00000473507 N/A N/A N/A N/A 0.445±0.00 1.067±0.00 N/A N/A N/A
ENST00000492902 1.123±0.00 N/A N/A N/A 1.822±0.00 N/A N/A N/A N/A
ENST00000611678 N/A 1.432±0.00 0.107±0.00 24.737±0.00 N/A N/A 0.032±0.00 0.108±0.00 1.991±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001HR CIL_0001HR_0002 CGP 10:102394110-102421539
CIL_0001HS CIL_0001HS_0002 CGP 10:102402617-102423136

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004871 NAS signal transducer activity
GO:0005086 IBA:IEA ARF guanyl-nucleotide exchange factor activity
GO:0005515 IPI protein binding
GO:0005543 IEA phospholipid binding
GO:0005886 IEA plasma membrane
GO:0007165 NAS signal transduction
GO:0016021 IEA integral component of membrane
GO:0030054 IBA cell junction
GO:0030182 IBA neuron differentiation
GO:0032012 IEA regulation of ARF protein signal transduction
GO:0042995 IEA cell projection
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076702 PSD3 pleckstrin and Sec7 domain containing protein_coding Danio_rerio
ENSDARG00000078102 PSD (1 of 2) pleckstrin and Sec7 domain containing protein_coding Danio_rerio
ENSDARG00000090933 CABZ01075947.1 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000037126 Psd pleckstrin and Sec7 domain containing protein_coding Mus_musculus

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