C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Sec61 alpha 2 subunit (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000065665 SEC61A2 9606 + 10:12129637-12169961 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000298428 SEC61A2-009 12129699-12164827 protein_coding
  ENST00000304267 SEC61A2-008 12129701-12169956 protein_coding
  ENST00000379017 SEC61A2-001 12129733-12153820 protein_coding
  ENST00000379020 SEC61A2-010 12129727-12165412 protein_coding
  ENST00000379033 SEC61A2-201 12129641-12165404 protein_coding
  ENST00000379051 SEC61A2-011 12129637-12155404 protein_coding
  ENST00000418772 SEC61A2-004 12143140-12158043 protein_coding
  ENST00000419021 SEC61A2-014 12149856-12164547 protein_coding
  ENST00000441368 SEC61A2-002 12129666-12157963 protein_coding
  ENST00000457034 SEC61A2-003 12136109-12149767 protein_coding
  ENST00000466451 SEC61A2-013 12157019-12158285 processed_transcript
  ENST00000472221 SEC61A2-012 12129702-12158048 nonsense_mediated_decay
  ENST00000475268 SEC61A2-006 12129694-12169961 nonsense_mediated_decay
  ENST00000495368 SEC61A2-007 12129699-12169961 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartMuscleTestisENST00000379020ENST00000379033ENST00000475268
Transcript ID Brain Heart Muscle Testis
ENST00000379020 4.787±0.00 N/A N/A N/A
ENST00000379033 4.335±0.00 0.843±0.00 2.807±0.00 N/A
ENST00000475268 N/A N/A N/A 17.326±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002474 TAS antigen processing and presentation of peptide antigen via MHC class I
GO:0002479 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent
GO:0003674 ND molecular_function
GO:0005783 IEA endoplasmic reticulum
GO:0008150 ND biological_process
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0042590 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I
GO:0043022 IEA ribosome binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000025816 Sec61a2 Sec61, alpha subunit 2 (S. cerevisiae) protein_coding Mus_musculus

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